Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j16
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    60   3e-10
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    29   0.54 
SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces ...    28   0.95 
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   3.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   5.1  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    25   6.7  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 60.1 bits (139), Expect = 3e-10
 Identities = 26/69 (37%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
 Frame = +2

Query: 98  SNILQDSRFTKYLSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRGRPIN-ET 274
           SN++ D RF    SDPR+ ++ +   KVK+D+RF+ + +D+ FK   +VD+ GRP+N + 
Sbjct: 17  SNVVADPRFQSVHSDPRFSRLKRGNFKVKVDERFKSLKEDKDFKTTASVDRYGRPLNQDK 76

Query: 275 STENLRKYY 301
           +T+ + + Y
Sbjct: 77  ATKEIDRLY 85


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +2

Query: 8   FALPLPASRRSKHKECFRLCHKKTKHLLK----MSNILQDSRFT--KYLSDPRYRQIPKH 169
           F LPL      K  EC   CH +  HL+     MSN L+    T  +    P+  ++P  
Sbjct: 499 FFLPLRRKDCFKCVECGITCHGQCAHLIPDYCGMSNDLKHQLLTELEVSKRPKKPELPNQ 558

Query: 170 ERKVKIDKRF-QPMFDDEKFKVKYTVDK 250
           E K   +K + +P+     F    T+ +
Sbjct: 559 ENKTTNEKVYRKPLSSQNTFDTLPTISQ 586


>SPAC977.15 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 395 SIDKIDPKTLNDKLTRGKLDKKIKTRL 475
           SI+ IDPKT+  K  R K  +KI + L
Sbjct: 83  SIEMIDPKTIEQKEARSKFMEKISSPL 109


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 359 GRFVKRPSTDDESIDKIDPKTLNDKLTRGKLDKKIKTRL 475
           G +VK P+T       I+   L DKL++GK+D  I + L
Sbjct: 200 GEWVKIPTTYAGGGRSIEDLDLVDKLSKGKVDLTIGSAL 238


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 11  ALPLPASRRSKHKECFRLCHKKTKHLLKMSNILQDSRF 124
           AL +P+   S  +E F LC +     L   N+LQ+  F
Sbjct: 236 ALSIPSLVLSLQEELFNLCQQTGTFYLLQHNLLQNFEF 273


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 140 DPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYTVDKRGRPINE 271
           +PR R+    E    IDK  +   +DE  K+   +DK+G  + +
Sbjct: 187 EPRKRKRLVREAVDHIDKERELEINDELKKISEKLDKKGEAVGQ 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,521
Number of Sequences: 5004
Number of extensions: 37791
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)