Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j16
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0697 + 20759176-20759817,20760592-20760708,20761422-207616...    46   2e-05
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062...    34   0.079
12_01_0558 + 4521616-4522296                                           29   3.9  
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    29   3.9  
08_02_1088 + 24247781-24249043                                         28   5.2  
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694...    28   6.9  

>07_03_0697 +
           20759176-20759817,20760592-20760708,20761422-20761696,
           20761906-20762068,20762293-20762421,20762989-20763713,
           20763853-20764081
          Length = 759

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 92  KMSNILQDSRFTKYLSDPRYRQIPKHERKVKIDKRFQPMFDDEKFKVKYT-VDKRGR 259
           K+   ++D RF    +DPR+R + + E KV++D RF  M  D +F      VDK GR
Sbjct: 89  KVRRAMEDERFAAARTDPRFRAMRRKEAKVELDSRFTSMLTDPRFSSSSAPVDKHGR 145


>04_04_1693 + 35404336-35404515,35405732-35406019,35406189-35406278,
            35406487-35406564,35406638-35406718,35407300-35407350,
            35407788-35407933,35408169-35408235,35408328-35408387,
            35408472-35408501,35408776-35408835,35408936-35409052,
            35409790-35409903,35410068-35410166,35410572-35410697,
            35410774-35410848,35410958-35411029,35411167-35411277,
            35411760-35411843,35413149-35413256,35414207-35414308,
            35414393-35414455,35414524-35414598,35414901-35414972,
            35415063-35415187,35415251-35415302,35415380-35415448,
            35415525-35415540,35415941-35415989,35416607-35417180
          Length = 1077

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 16/39 (41%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +2

Query: 161  PKHERKVKIDKRFQPMFDDEKFKVKYTVD-KRGRPINET 274
            PK++R+ +I K++Q    D +FKV   V+ +R RPI++T
Sbjct: 996  PKYKRRERIKKKYQAHDPDNQFKVGDVVELRRSRPISKT 1034


>12_01_0558 + 4521616-4522296
          Length = 226

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 380 STDDESIDKIDPKTLNDKLTRGKLDKKI--KTRLLDLDID-YARGE 508
           S DD+++   DP T  ++     + +++    RLLDL  D  ARGE
Sbjct: 64  SEDDDAVTSYDPVTAAERAASASVSRRVGEAVRLLDLGRDLQARGE 109


>10_08_0425 -
           17806117-17806401,17806862-17806984,17807076-17807222,
           17807307-17807450,17808557-17808668,17808762-17808898,
           17809016-17809156,17810921-17811004,17811275-17811742,
           17811858-17811936,17812494-17812506,17813884-17814460,
           17814502-17814774,17814899-17815045,17815354-17815413,
           17816124-17816510
          Length = 1058

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = +2

Query: 65  CHKKTK-HLLKMSNILQDSRFTKYLS----DPRYRQIPKHERKVKIDKRFQPMFDDEKFK 229
           C ++ K  +LK   +L  S++ K L     DPR++ IP H R+    +++     DE+ K
Sbjct: 662 CTRQFKVEMLKERGVLPFSKWEKELPKIVFDPRFKAIPSHSRRRSTFEQYVRTRADEERK 721

Query: 230 VK 235
            K
Sbjct: 722 EK 723


>08_02_1088 + 24247781-24249043
          Length = 420

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 356 PGRFVKRPSTDDESIDKIDPKTLNDKLTRGKLDKK 460
           P      P+T  ESI K+D  T+  + T GK  KK
Sbjct: 156 PAAKADMPATGKESIAKVDAATVAKESTAGKTGKK 190


>07_03_1781 +
           29468919-29468951,29469057-29469184,29469349-29469433,
           29469771-29469824,29470072-29470163,29470280-29470383,
           29470811-29470886,29471231-29471678,29471874-29471916,
           29471977-29472209,29472302-29472505,29472595-29472693,
           29472789-29472861,29473373-29473500,29473614-29473836,
           29473992-29474215,29474296-29474423,29475053-29475167,
           29475603-29475658,29475795-29475888,29475966-29476152,
           29476229-29476309,29476384-29476484,29476567-29476629,
           29476800-29476907
          Length = 1059

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -2

Query: 191 YQFLPFFHVSGFVCIVDHSN---IW*IDYLAKYYSSSID 84
           Y+FL F    GF+  + + N   +W +++   +YSS  D
Sbjct: 78  YKFLQFIQNQGFLIAISNENEIQVWNLEFRQLFYSSKWD 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,026,890
Number of Sequences: 37544
Number of extensions: 201855
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)