Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j16
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 206 MFDDEKFKVKYTVDKRGRPINETSTENLRKYY 301
           ++D+   + +  VD+ G  INE    N R++Y
Sbjct: 468 LYDEGTVRRRVAVDRSGIDINEEIQRN-REFY 498


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 200 QPMFDDEKFKVKYTVDKRGRPINETSTENLRKYY 301
           +P +D ++   K  V K+GR    TS +  RK++
Sbjct: 412 KPSYDAQEPAWKTHVWKKGRDKKSTSKKPRRKFH 445


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = +2

Query: 98  SNILQDSRFTKYLSDPRYRQIPKHERKVKI 187
           + I+Q  +++  L+  ++    KH   VK+
Sbjct: 93  AKIIQTEKYSNMLNSEKHASFLKHSNIVKV 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,280
Number of Sequences: 438
Number of extensions: 2407
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)