Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j14
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo...    35   0.014
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   2.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   2.7  
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c...    26   4.8  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.8  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    26   6.3  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    26   6.3  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   8.4  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   8.4  

>SPCC965.07c |gst2||glutathione S-transferase
           Gst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = +1

Query: 73  LYSYWRSSCSWRVRIALNLKEIPYDIKAVSLIKGGGEQHCNEYREVNPMEQVPSLC---I 243
           LYS+      W+V +AL    + Y+       KG  EQ C E+  +NP  +VP+L     
Sbjct: 6   LYSHAGGPNPWKVVLALKELNLSYEQIFYDFQKG--EQKCKEHLALNPNGRVPTLVDHKN 63

Query: 244 DGHTLIESLNIMHYLEE 294
           + +T+ ES  I+ YL +
Sbjct: 64  NDYTIWESDAILIYLAD 80


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 43  DPIVENKQPVLYSYWRSSCSWRVRIALNLKEIPYDIKAVSLI 168
           DP  E +    YS W S     ++ A    E  YDIKA+ ++
Sbjct: 303 DPEDEERLEKPYSVWTSMMQRSIQTAAYFDEEQYDIKAMRML 344


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +2

Query: 491 RPLPENIVLVMRLPLPIAA*FHKCSMLEDFMLIYVRSQSSSA*TVNWRIIPHSVRLIHLL 670
           RPL +++  ++ LPL     F  C  L++F+ ++     +    +   I+   +   H L
Sbjct: 378 RPLQKSLCAILLLPLTYFPSFSYCLELQNFLPVFNAQDPNLRYDIARMIVQKIIEKGHSL 437

Query: 671 SQIV-LQKLL 697
           S++   Q+LL
Sbjct: 438 SELTEAQELL 447


>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 275 MFNDSIRVCPSMHKDGTCSIGLTSLYSLQCCSPPPLIR 162
           ++ND     P +   G C +G+ S      C PP ++R
Sbjct: 208 VYNDLQGKIPLILDGGACGVGVESTVVNGLCDPPVILR 245


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 112 RIALNLKEIPYDIKAVSLIKGGGEQHCNEYREVN 213
           R+A  L  +P++    SL  G  E   N YRE+N
Sbjct: 336 RLANRLYSMPHEYPNFSLAPGTPESLSNTYRELN 369


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 379 IQPLQNLIVLIYVGEEKKKEWSQHW 453
           IQPL  L + +Y G +KK +  ++W
Sbjct: 71  IQPLSTLALKLYEGLDKKFDGKKNW 95


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 16  PRTV*YKMSDPIVENKQPV 72
           P TV YK++DP   NK P+
Sbjct: 90  PETVLYKVADPNENNKYPI 108


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 8   SYLLELCDIK*VILLLKTSSQYYTHT 85
           +YLL LC     +++L  S ++Y HT
Sbjct: 276 AYLLPLCVFVIPLIILAVSKRFYKHT 301


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 456 HKGLQSYRKVAIDHCRKILC 515
           +K L+ Y+K    HC ++LC
Sbjct: 99  YKMLEKYKKCDFGHCPRVLC 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,072,441
Number of Sequences: 5004
Number of extensions: 63741
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)