Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j04
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    51   1e-07
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    46   5e-06
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    43   3e-05
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    40   4e-04
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   1.8  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    27   3.2  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.8  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    25   9.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   9.8  

>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
 Frame = +1

Query: 271 LTRCGIGKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYN 447
           L   G+ ++ + D D ++L+N+NR F F+       K   AA T  + NP+V ++AY+ N
Sbjct: 44  LLMSGVKEVHIIDLDTIDLSNLNRQFLFRKKHVKQPKAIVAAKTASSFNPNVKLEAYHAN 103

Query: 448 ITTVDNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESGVSENA 627
           I   D F                 DLV + +DN +AR  +N  C        ESG +   
Sbjct: 104 IKE-DRF---------NVAWFRQFDLVFNALDNLDARRHVNKQCLLASVPLIESGTT--G 151

Query: 628 VSGHIQFISPGES 666
             G +Q I  G++
Sbjct: 152 FLGQVQVIIHGKT 164


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
 Frame = +1

Query: 289 GKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVT--IDAYNYNITTV 459
           G + + D D +E +N+NR F F+P   G  K + A+  +  +NP +T  I +Y   +   
Sbjct: 457 GHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGP- 515

Query: 460 DNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESGVSENAVSGH 639
           ++   F D   +       + LV + +DN EARM ++  C   ++   ESG       G+
Sbjct: 516 ESEGIFGDEFFE------KLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTL--GTKGN 567

Query: 640 IQFISP 657
            Q + P
Sbjct: 568 TQVVVP 573


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
 Frame = +1

Query: 154 YSRLMALKRMGIVNNYEQIREKTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELAN 333
           Y R M L  +G+      ++  +              + L   GIG L + D D V+ +N
Sbjct: 24  YGRQMLLSEIGLPGQLS-LKRSSVLVIGAGGLGCPAMQYLVAAGIGTLGIMDGDVVDKSN 82

Query: 334 MNR-LFFQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDNFQKFCDTISKGSLTG 510
           ++R +     + G+ K  +A   L+++NP+V I+ Y     +  N     +         
Sbjct: 83  LHRQIIHSTSKQGMHKAISAKQFLEDLNPNVIINTY-LEFASASNLFSIIEQY------- 134

Query: 511 GTVDLVLSCVDNFEARMAINTAC 579
              D+VL C DN   R  I+  C
Sbjct: 135 ---DVVLDCTDNQYTRYLISDTC 154


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
 Frame = +1

Query: 268 MLTRCGIGKLILFDYDKVELANMNRLFFQPHQ-AGLSKVDAAAATLQNINPDVTIDAYNY 444
           ML R G+ K+ + D+D+V L+++NR      Q  G  K  A    ++   P + +DA N 
Sbjct: 144 MLARSGVQKIRIVDFDQVSLSSLNRHSIATLQDVGTPKTLAIKKAIKKFAPWIEVDARN- 202

Query: 445 NITTVDNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTAC 579
                       +  S   L  G  D V+  +DN + ++ + + C
Sbjct: 203 ---------ALFNPDSADDLLSGNPDFVIDAIDNIQTKVDLLSYC 238


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 367 GLSKVDAAAATLQNINPDVTIDAY 438
           GL +VD A+   +N  PD+T+  Y
Sbjct: 830 GLKRVDCASIRRENFKPDITLKDY 853


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 460 DNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESGVSENAVSGH 639
           DN ++       G +   ++  V  C+D+   R+      N LD KW ES  ++ A S  
Sbjct: 217 DNIEEKSILDIAGVVDFSSLSNVQKCLDDLAMRICRQAVLNSLDTKW-ESPFAKTAKSFG 275

Query: 640 IQF 648
            +F
Sbjct: 276 FKF 278


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 373 SKVDAAAATLQNINPDVT--IDAYNYNITTVDNFQKFCDTISKG 498
           +K+    AT  + + DV    +AY +NI  V N     D I KG
Sbjct: 192 NKITIDGATSMSFDEDVEKRFEAYGWNIVRVANGDTDLDGIEKG 235


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 487 ISKGSLTGGTVDLVLSCVD 543
           +SKG+L  G+ D  LSC D
Sbjct: 195 LSKGTLVSGSQDATLSCWD 213


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
 Frame = -3

Query: 662 SPGEMNCMCPETAFSLTPD-----SNHF*SSSLQAVLMAMRASKLSTQ 534
           +P   N   P T FS  P      SNHF S+S Q+ L +  A  L+ +
Sbjct: 239 APPNSNNANPSTLFSSIPSSRHTTSNHFPSNSAQSSLFSPTARPLTAR 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,308
Number of Sequences: 5004
Number of extensions: 43110
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)