Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26j04
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 52 3e-07
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 50 2e-06
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 48 9e-06
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 47 1e-05
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 45 5e-05
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816... 44 8e-05
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 40 0.002
07_03_1697 - 28795521-28797328,28797430-28797550 31 0.82
04_03_0792 + 19693957-19694146,19695614-19696260 29 2.5
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 29 4.4
11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778... 28 7.7
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 52.4 bits (120), Expect = 3e-07
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Frame = +1
Query: 289 GKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDN 465
GKL + D D +E +N++R F F+ +K AAA INP++ IDA N D
Sbjct: 527 GKLTITDDDVIEKSNLSRQFLFRDWNIRQAKSTVAAAAASAINPNLCIDALQ-NRACPDT 585
Query: 466 FQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESG 612
F DT +G +D+V++ +DN ARM ++ C + ESG
Sbjct: 586 ENVFHDTFWEG------LDVVINALDNVNARMYMDMRCLYFQKALLESG 628
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Frame = +1
Query: 262 AEMLTRCGIGKLILFDYDKVELANMNR-LFFQPHQAGLSKVDAAAATLQNINPDVTIDAY 438
A ML R G+G+L+L D+D+V L+++NR G K I P+ I+A
Sbjct: 111 ASMLLRSGVGRLLLVDFDQVSLSSLNRHAVATRDDVGTPKALCLKKHFSMIYPECQIEA- 169
Query: 439 NYNITTVDNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTAC 579
V + C+ + G D VL C+DN + ++A+ AC
Sbjct: 170 -----KVQLYDPSCE----DEILSGQPDFVLDCIDNIDTKVALLAAC 207
>03_02_0665 -
10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 47.6 bits (108), Expect = 9e-06
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Frame = +1
Query: 262 AEMLTRCGI-GKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDA 435
A M CG+ GKL + D D +E +N++R F F+ G +K AAA IN + I+A
Sbjct: 611 ALMGVSCGLKGKLTITDDDIIEKSNLSRQFLFRDWNIGQAKSTVAAAAASAINSSLHINA 670
Query: 436 YNYNITTVDNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESG 612
N + F D +G +D++++ +DN ARM ++ C + ESG
Sbjct: 671 LQ-NRACPETEHVFHDKFWEG------LDVIINALDNVNARMYMDMRCLYFQKPLLESG 722
>11_01_0039 -
290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 47.2 bits (107), Expect = 1e-05
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Frame = +1
Query: 289 GKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDN 465
GKLI+ D D +E +N++R F F+ G K AA INP + ++A N + +
Sbjct: 620 GKLIVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMAINPKLHVEALQ-NRASPET 678
Query: 466 FQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESG 612
F D + ++D V++ +DN ARM I++ C + ESG
Sbjct: 679 ENVFNDAFWE------SLDAVVNALDNVTARMYIDSRCVYFQKPLLESG 721
>12_01_0038 -
312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 45.2 bits (102), Expect = 5e-05
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Frame = +1
Query: 289 GKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDN 465
GKL + D D +E +N++R F F+ G K AA INP + ++A N + +
Sbjct: 496 GKLTVTDDDVIEKSNLSRQFLFRDWNIGQPKSTVAATAAMAINPKLHVEALQ-NRASPET 554
Query: 466 FQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESG 612
F D + ++D V++ +DN ARM I++ C + ESG
Sbjct: 555 ENVFNDAFWE------SLDAVVNALDNVTARMYIDSRCVYFQKPLLESG 597
>07_03_1076 +
23779941-23779988,23780102-23780191,23781580-23781663,
23781792-23782010,23782873-23782974,23783809-23784207,
23784332-23784561,23784749-23784842,23784931-23785113,
23785254-23785351,23785831-23786143
Length = 619
Score = 44.4 bits (100), Expect = 8e-05
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Frame = +1
Query: 271 LTRCGIGKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYN 447
L G + + D D +E++N+NR F F+ G SK A + P++ I +Y+ N
Sbjct: 36 LALSGFRDIHIIDLDTIEVSNLNRQFLFRQSHVGQSKAHVARDAVLKFRPNINITSYHAN 95
Query: 448 ITTVDNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESGVS 618
+ +F + +VL+ +DN +AR +N C + ESG +
Sbjct: 96 VKDAQFNVEFFKQFN----------VVLNGLDNLDARRHVNRLCLAAEVPLVESGTT 142
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 39.5 bits (88), Expect = 0.002
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 1/125 (0%)
Frame = +1
Query: 154 YSRLMALKRMGIVNNYEQIREKTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKVELAN 333
Y R + L + G+ ++ + + A L CG+G L + D D+VEL N
Sbjct: 77 YRRHLLLPQFGL-EGQRKLSQSSILVVGAGGLGSPVAMYLAACGVGCLGIVDGDRVELDN 135
Query: 334 MNR-LFFQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDNFQKFCDTISKGSLTG 510
++R + G KV + AA+ + D+ +DA N N+ + C ++K ++G
Sbjct: 136 LHRQIIHIEAYVGQPKVKSTAASCRAY--DIVVDATN-NLPSRYMISDCCVLMNKPLISG 192
Query: 511 GTVDL 525
V L
Sbjct: 193 SAVGL 197
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 339 PAVLPASPSRAQQGGCSCCHITEH*P*CHH*C 434
P LP+ R + CCH H P CHH C
Sbjct: 338 PRGLPSRRYRRCRADHPCCHDARHGPSCHHGC 369
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 367 GLSKVDAAAATLQNINPDVTIDAYNY 444
GL+++ A A L+N NP V D YN+
Sbjct: 79 GLAELPATVAALKNPNPKVVYDEYNH 104
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 641 MCPETAFSLTPDSNHF*SSSLQAVLMAMRASKLSTQLRTRST-VPPVKLP 495
+ P T +L+PDSN+ + S ++ R ++ + LR +ST PP P
Sbjct: 2565 LAPVTCVALSPDSNYLVTGSRDTTVILWRIRQIGS-LRKKSTPEPPPSTP 2613
>11_04_0388 +
17076157-17076254,17076762-17076813,17077672-17077867,
17078242-17078321,17078465-17078581,17078895-17078950,
17079238-17079268,17079292-17079342,17080411-17080477,
17080621-17080724,17080802-17080909,17081874-17081987
Length = 357
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +1
Query: 283 GIGKLILFDYDKVELANMNRLFFQPHQ----AGLSKVDAAAATLQNINPDVTI 429
G+G L L D V ++N F PH G S+ + +L++ NP V +
Sbjct: 59 GVGSLSLMDDHLVTEDDLNANFLIPHDESIYGGRSRAEVCCESLKDFNPMVRV 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,420
Number of Sequences: 37544
Number of extensions: 287510
Number of successful extensions: 723
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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