Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j04
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical p...   285   3e-77
AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical pr...    37   0.015
U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membran...    34   0.079
Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF016443-11|AAC24278.2|  350|Caenorhabditis elegans Hypothetical...    29   3.9  

>U88169-12|AAB42231.1|  419|Caenorhabditis elegans Hypothetical
           protein T03F1.1 protein.
          Length = 419

 Score =  285 bits (698), Expect = 3e-77
 Identities = 135/189 (71%), Positives = 156/189 (82%)
 Frame = +1

Query: 100 PMRQKIEVMSSEVVDSNPYSRLMALKRMGIVNNYEQIREKTXXXXXXXXXXXXTAEMLTR 279
           P RQKIE +S+EVVDSNPYSRLMAL+RMGIVN YE+IREKT             AEMLTR
Sbjct: 46  PYRQKIEKLSAEVVDSNPYSRLMALQRMGIVNEYERIREKTVAVVGVGGVGSVVAEMLTR 105

Query: 280 CGIGKLILFDYDKVELANMNRLFFQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTV 459
           CGIGKLILFDYDKVE+ANMNRLF+QP+QAGLSKV+AA  TL ++NPDV I+ +N+NITT+
Sbjct: 106 CGIGKLILFDYDKVEIANMNRLFYQPNQAGLSKVEAARDTLIHVNPDVQIEVHNFNITTM 165

Query: 460 DNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESGVSENAVSGH 639
           DNF  F + I KGSLT G +DLVLSCVDNFEARMA+N ACNE +Q W ESGVSENAVSGH
Sbjct: 166 DNFDTFVNRIRKGSLTDGKIDLVLSCVDNFEARMAVNMACNEENQIWMESGVSENAVSGH 225

Query: 640 IQFISPGES 666
           IQ+I PG++
Sbjct: 226 IQYIEPGKT 234


>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 1/147 (0%)
 Frame = +1

Query: 142 DSNPYSRLMALKRMGIVNNYEQIREKTXXXXXXXXXXXXTAEMLTRCGIGKLILFDYDKV 321
           D+  YSR + +   G V+  + ++                A  L   GIG + + DYD +
Sbjct: 14  DAGRYSRQLLVDDFG-VSGQKNLKNLNVLIVGAGGLGCPVATYLGAAGIGTIGIVDYDHI 72

Query: 322 ELANMNR-LFFQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTVDNFQKFCDTISKG 498
            L N++R + ++  Q G SK  A A  ++  N D+ +  +N ++ + +  Q F       
Sbjct: 73  SLDNLHRQVAYKEDQVGKSKAQALADNIKLQNSDLNVQVHNTSLDSSNAMQLF------- 125

Query: 499 SLTGGTVDLVLSCVDNFEARMAINTAC 579
                  ++V  C DN   R  IN  C
Sbjct: 126 ----KNYEIVCDCTDNVATRYLINDVC 148


>Z82062-5|CAB54319.4|  582|Caenorhabditis elegans Hypothetical
           protein W02A11.4 protein.
          Length = 582

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
 Frame = +1

Query: 283 GIGKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYNITTV 459
           G  K+ + D D ++++N+NR F F+      SK   A   ++   P + +   + +I   
Sbjct: 36  GFRKVHVIDLDTIDISNLNRQFLFRKEHVSSSKAATATQVVKQFCPQIELTFDHDSIFEK 95

Query: 460 DNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNELDQKWFESGVSENAVSGH 639
               +F              D+VL+ +DN  AR  +N  C+  ++   +SG       G 
Sbjct: 96  KYNMEFFQAY----------DIVLNALDNRAARNYVNRMCHAANRPLIDSG--SGGYFGQ 143

Query: 640 IQFISPGES 666
           +  I  G++
Sbjct: 144 VSVIMRGKT 152


>U40187-3|AAA81160.2|  430|Caenorhabditis elegans Ectopic membrane
           ruffles in embryoprotein 1 protein.
          Length = 430

 Score = 34.3 bits (75), Expect = 0.079
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 271 LTRCGIGKLILFDYDKVELANMNRLF-FQPHQAGLSKVDAAAATLQNINPDVTIDAYNYN 447
           L   G   + + D D ++++N+NR F F+    G SK + AAA +Q       + A+N  
Sbjct: 61  LALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAHNCR 120

Query: 448 ITTVDNFQKF 477
           I   D  Q+F
Sbjct: 121 IE--DKGQEF 128


>Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical
           protein F58D2.1 protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 448 ITTVDNFQKFCDTISKGSLTGGTVDLVLSCVDNFEARMAINTACNEL 588
           I  ++   K C  I++     G +  V SCV+NFE+  AIN  C EL
Sbjct: 454 IKIIEKSSKACMEITEA----GIISFVSSCVENFESN-AINDKCLEL 495


>AF016443-11|AAC24278.2|  350|Caenorhabditis elegans Hypothetical
           protein C17E7.10 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 403 QNINPDVTIDAYNYNITTVDNFQKFCDTISKGSLTGGTVDL 525
           ++ +P  T D+ N +  T+D F K C T+      G   DL
Sbjct: 30  KHCDPKCTFDSRNLSSKTIDLFPKTCSTVCSDLQIGEDCDL 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,584,091
Number of Sequences: 27780
Number of extensions: 249210
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)