Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26j03
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 43 3e-05
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.0
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 28 1.0
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 3.1
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 3.1
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar... 26 4.2
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 26 5.5
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 25 7.3
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 9.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 25 9.6
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 25 9.6
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 43.2 bits (97), Expect = 3e-05
Identities = 25/98 (25%), Positives = 46/98 (46%)
Frame = +1
Query: 337 SLILEDEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLYVSSKFKEISKVIPSQNIR 516
S L E +++Y+D L Y GE + +D + ++ + + K P +NI+
Sbjct: 137 SKYLSKETFLNLDYIDNHLASNEYFAGEQFTAADPQMCFPIFAAQRDYLSQK--PYKNIK 194
Query: 517 RWMKLVEAQPQVQTAIKALPSDALDKLTKVSSRKSPPT 630
RWM++V +P + A + + + L + V PPT
Sbjct: 195 RWMRVVSDRPACRIAAEKVEDNTLTLFSDVERYSHPPT 232
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 160 SSAKEIDIVWENDSVIILPNSTKPVPFGTSND 255
S A+ D W + ++I PNS++ +G +ND
Sbjct: 195 SEAETRDFNWLSKGIVIFPNSSECAFYGNNND 226
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +1
Query: 196 DSVIILPNSTKPV-PFGTSNDLIRILENT--FNKSVSPLEKVTMNHWLSFSLILEDEIPK 366
DS++ P + P G SND++ + + F + LEK ++WL + I+ P
Sbjct: 175 DSLLYYPVWVRRTDPVGVSNDVMGSVPHHPYFELIIQNLEKNAKSYWLPYLTIMLSTGPL 234
Query: 367 SVEYL 381
S+ +L
Sbjct: 235 SISFL 239
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 344 IRLKDNQ*FIVTFSSGLTDLLKV-FSRILI 258
+RL D+Q F+ +SS +DLLK SRIL+
Sbjct: 413 LRLPDSQTFVQLYSSTESDLLKEGLSRILL 442
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 455 TLKTAKSDTDKVSPTK*VSGPSVLSK 378
TLK K D D +PT + PS +SK
Sbjct: 289 TLKVTKEDEDPTTPTNAIPIPSSMSK 314
>SPAC1002.01 ||SPAC1610.05|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 357 FIFQYKTERQP-MIHCDFLKWTHRLVKGIFKNSNQIIASPKWHWFGGIWKNNN*VILPND 181
FI Q K + I D W RL+K K ++Q P H F ++ + ILP
Sbjct: 43 FILQEKVQSSNHTIRSDTKLWK-RLLKITGKQAHQFKDKPFSHIFAFLFLHELSAILPLP 101
Query: 180 VYFFCRRSV 154
++FF S+
Sbjct: 102 IFFFIFHSL 110
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.8 bits (54), Expect = 5.5
Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 3/162 (1%)
Frame = +1
Query: 154 YRSSAKEIDIVWENDSVI---ILPNSTKPVPFGTSNDLIRILENTFNKSVSPLEKVTMNH 324
Y E+D+VW+N ++I I ++ P + + +NT + L+ VT
Sbjct: 1081 YLQFKNELDLVWQNINIIAEYIEGQTSTPSAVSEQATMAMLSQNT-EELEDLLDTVT--- 1136
Query: 325 WLSFSLILEDEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLYVSSKFKEISKVIPS 504
SFS D K ++YL+ L + + + V+ K E+ ++ P
Sbjct: 1137 --SFSAFCSD-YSKQIDYLEAC---LVRINAKRIQVTRLLKALTNPAFEKQMELRQLGP- 1189
Query: 505 QNIRRWMKLVEAQPQVQTAIKALPSDALDKLTKVSSRKSPPT 630
+ +RR +L +V ++ L A+D + R PT
Sbjct: 1190 EALRRQKELRLKMEKVLKSLSTLEQQAVDARMSDTRRFKKPT 1231
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 436 DFAVFSVLYVSSKFKEISKVIPSQNIRRWMKLVEAQPQVQTAIKALPSDALDKLTKVS 609
D A + Y + + I + PSQ + ++++ + + T I P D LDK +S
Sbjct: 293 DIADSGMRYQTGDYASICPMNPSQAVDDLLEVLGLKEKRDTVIIVKPIDTLDKAPVLS 350
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/67 (20%), Positives = 32/67 (47%)
Frame = +1
Query: 337 SLILEDEIPKSVEYLDKTLGPLTYLVGETLSVSDFAVFSVLYVSSKFKEISKVIPSQNIR 516
S + + +P + + TLG LT+ + S + + +YV + + +V+ +N
Sbjct: 157 SRLFQRTVPPIMPFAMGTLGFLTHFDVKKYKTSILEICNEMYVHLRTRFECRVMKKKNRT 216
Query: 517 RWMKLVE 537
+W+ + E
Sbjct: 217 QWINIDE 223
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 25.0 bits (52), Expect = 9.6
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +1
Query: 340 LILEDEIPKSVEYLDKTLGPLTYLVGE--TLSVSDFAVFSVLYVSSKFKEISKVIPSQNI 513
++L+ E K ++ + GPL ++GE + V ++++ + SK + Q
Sbjct: 2270 IVLKTEPSKLRPFVTQITGPLIRIIGERFPVEVKCAILYTLNIILSKISTFLRPFLPQLQ 2329
Query: 514 RRWMKLVEAQPQVQTAIKALPSDALDKLTKVSSRKSP-PTNAESGGR 651
R + K + P + I++ + AL L + +R +P T SG R
Sbjct: 2330 RTFAKCL-GDPSSE-VIRSRAATALGTLITLQTRLAPIITELVSGAR 2374
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 184 RCLFLLPTICKILQPSNHL 128
R LF+ PT+ + +P+NHL
Sbjct: 433 RILFIKPTLMMLDEPTNHL 451
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 25.0 bits (52), Expect = 9.6
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -3
Query: 306 LKWTHRLVKGIFKNSNQIIASPK 238
L+WT L++G+F + +++ P+
Sbjct: 94 LEWTRVLLRGVFCHDQEMLVGPR 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,434
Number of Sequences: 5004
Number of extensions: 59218
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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