Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26j03
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.16 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    24   1.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    24   1.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.5  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   7.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.8  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   7.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +1

Query: 163 SAKEIDIVWENDSVIILPNSTKPVPFGTSNDLIRILENTFNKSVSPLEKVTMNHWLSFSL 342
           S+  +++ W NDS   + +++   P G S+       ++F  SVSP    + N+     L
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSENYTGISDL 119

Query: 343 ILEDEIPKSVEYLD 384
            + D++   +  L+
Sbjct: 120 FVFDDLNDYINRLN 133


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 581 MPLTNLPKFPPGNHHQQML 637
           MP + +P + PGNH Q  L
Sbjct: 334 MPPSGIPNWVPGNHDQLRL 352


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 581 MPLTNLPKFPPGNHHQQML 637
           MP + +P + PGNH Q  L
Sbjct: 334 MPPSGIPNWVPGNHDQLRL 352


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 475 FKEISKVIPSQNIR---RWMKLVEAQPQVQTAIKALPSDALDKLTKVSSRK 618
           F+EI       N+R   R   L EA   ++  I  LPSD   KL+K+ + K
Sbjct: 248 FEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSD---KLSKIQTLK 295


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  YFRSKYSMMRVSCNRSNPPLGGLMAVEFYRSSAKEID 180
           +F++K + ++ +  + NP    LMA   Y  S   +D
Sbjct: 67  WFQNKRAKIKKASGQKNPLALQLMAQGLYNHSTVPVD 103


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 649 YLLIQHLLVVISWRKLW 599
           Y +   L+VVISW   W
Sbjct: 238 YYIPSILIVVISWVSFW 254


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 407 IWLVKLYLYQTLRSSVFF 460
           IWLV LY Y  L+ ++ +
Sbjct: 6   IWLVSLYWYLILQIALVY 23


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 554 KQL*RLCRLMPLTNLPKFPPGNHHQ 628
           +Q+ R   + PLT  P+F P N ++
Sbjct: 140 EQIPRFRHIGPLTPFPRFIPPNAYR 164


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 256 LIRILENTFNKSVSPLEKVTMNHWLSFSL 342
           L+R L   +NK + P++ +T    ++F L
Sbjct: 30  LVRDLFRGYNKLIRPVQNMTEKVHVNFGL 58


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 554 KQL*RLCRLMPLTNLPKFPPGNHHQ 628
           +Q+ R   + PLT  P+F P N ++
Sbjct: 381 EQIPRFRHIGPLTPFPRFIPPNAYR 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,902
Number of Sequences: 438
Number of extensions: 3661
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)