Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26h11
         (247 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   0.97 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   1.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.2  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    19   6.9  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    19   6.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   9.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 0.97
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -1

Query: 214 SLSGRSPWTARCGRAELRQRPMGSANE 134
           +++ RSP  A  G +++RQRP+  +++
Sbjct: 910 NVTPRSPGRAWPGDSDIRQRPIPRSDD 936


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 1.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 128 NAMPLANSKSLTISSFLKPPS*FLLDGAVGTSPGTGQYTSV 6
           NA  +  S+       LKP + + +     T+ G G+YT V
Sbjct: 469 NATVIQTSELSATFKGLKPSTDYAIQVRAKTTRGWGEYTPV 509


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 2.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +1

Query: 142 PIPLGAVATQ 171
           P PLGAVAT+
Sbjct: 141 PTPLGAVATE 150


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 117 WHGVGYSFADPIGRCRNS 170
           W G G   +D +G CR +
Sbjct: 262 WLGSGQYISDFVGSCRKT 279


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 3.0
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 117 WHGVGYSFADPIGRCRNS 170
           W G G   +D +G CR +
Sbjct: 300 WLGSGQYISDFVGSCRKT 317


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.8 bits (39), Expect = 5.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -1

Query: 205 GRSPWTARC 179
           G +PW+ RC
Sbjct: 922 GSNPWSCRC 930


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +2

Query: 26 SPDWCPP 46
          +PDW PP
Sbjct: 26 APDWVPP 32


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 19.4 bits (38), Expect = 6.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +2

Query: 26 SPDWCPP 46
          +PDW PP
Sbjct: 26 APDWVPP 32


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 9.1
 Identities = 13/67 (19%), Positives = 30/67 (44%)
 Frame = +1

Query: 31   GLVPTAPSSRNYDGGFKNELMVKDLELASGMALGIRSPIPLGAVATQLYRIVQSRGYGQK 210
            G +  A    + +GG  +E  +K       + + + + I +  VA  +  +++ +G+G  
Sbjct: 1557 GTIAPARELPDVNGGGNDEDPMKIFMANLNLVVPVVAAILVIIVAVIVICVLRGKGHGSD 1616

Query: 211  DFSFVFQ 231
                V+Q
Sbjct: 1617 KDDVVYQ 1623


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,900
Number of Sequences: 438
Number of extensions: 1371
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4275738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)