Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26h08
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.3  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    26   3.9  
SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   5.2  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   6.8  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   6.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 195 PSNTPLFGSTKAH*LTPFLKN 133
           PS++PL  STKA   TPF++N
Sbjct: 37  PSSSPLASSTKASTSTPFVEN 57


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
 Frame = -3

Query: 523 VIKPRVTIRAAETPSPQSTVHPTASKNADRNELSSPLYTNIESLYI*TQHTRNMRIPTRI 344
           ++K  V   +A  PSP S ++ +   NAD  E  + L  N  +  +  +   ++ +    
Sbjct: 444 LLKNEVARLSAICPSPNSGINASVLTNADNLEKENLLLVNNNAFKVDDRSVSSVALDDHN 503

Query: 343 T*LQ*NLEAHETSSCPSSCHTPFENSKQFPLNSSWCILIGTI-TQSDSMRPIKYPAIWLN 167
             LQ N+E  E      +      +     LN+++ +L   + T+  +++ I+   I L 
Sbjct: 504 RQLQMNVEELEGKKADLTSKINRLDKDFVKLNTTYSLLTDQVKTKQLALQEIESRVIRLE 563

Query: 166 KSTLVNAISKKRLQ 125
           +   +N + K  +Q
Sbjct: 564 ER--LNMLQKLSMQ 575


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 535 LSHQVIKPRVTIRAAETPSPQS-TVHPTASKNADRNELSSPL 413
           LSH++ +PRVT        P S ++H  +S   D + L + L
Sbjct: 259 LSHKLTRPRVTASGNSRRRPLSRSIHSLSSSRIDFSSLDTGL 300


>SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 73

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 468 VLCGLGVSAALMVTLGFMTWCDNIIERFPSCEDATGQDIDTKDK 599
           +L G+  S A+  T+G+  + D  I R PS    T Q  +TK K
Sbjct: 26  ILIGIAGSTAIF-TMGYKIYSDPEIRRSPSWVAQTQQKEETKVK 68


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 274  ENSKQFPLNSSWCILIGTITQSDSMRPIKYPAIW 173
            EN++   L + WC  +   T  DS   ++YP I+
Sbjct: 1865 ENNQILELIAGWCEHLAQNTWGDSTISLEYPGIY 1898


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
 Frame = +3

Query: 132 RFLEMALTNVLLLSQIAGYLMGLILSLCVIVPM-------SMH--QDEFSGNCLLFSKGV 284
           R L  A  N+ L +Q    ++  +   C+   +        +H  Q  +S   L FSKG 
Sbjct: 448 RHLRAAEKNIALNTQPPAQILNRLYFFCIQTQLLEVAQCAELHAVQGYYSFPYLTFSKGK 507

Query: 285 WQEDGQLL 308
           W++DG  L
Sbjct: 508 WRKDGDSL 515


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 370 LCAAFRYTDS-QCWCTKGRIAHFCRHSWRLLDVLCS 474
           L A FR  +  Q W T+GRI H    + +L+  L S
Sbjct: 32  LAALFRGVEIIQAWSTRGRIPHSVESTSQLVSSLIS 67


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 610 TVEILSFVSMS*PVASSQLGNRSMMLSHQVIKPRVTIRAAETPSPQSTVHP 458
           T +  ++V  S P ASS +   +  +   VI    +   A TPSP + V+P
Sbjct: 262 TTKTTTYVGPS-PSASSVVAYTTKCIVVPVITTAASQSEAATPSPSAAVYP 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,223
Number of Sequences: 5004
Number of extensions: 57753
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)