Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26g19
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    25   0.94 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.8  

>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +1

Query: 511 PPGFAETVYLAFAKGPLRLRPLATTMKIVVNFFLCITQLGFCCVYIVF 654
           PP +++ V+  +   P   +     + I+ +  L ++ +G CCV  +F
Sbjct: 35  PPEYSDLVHPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIF 82


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +1

Query: 511 PPGFAETVYLAFAKGPLRLRPLATTMKIVVNFFLCITQLGFCCVYIVF 654
           PP +++ V   +   P   +     + I+ +  L ++ +G CCV  +F
Sbjct: 35  PPEYSDLVRPHWRAFPAPGKHFHIGLAIIYSMLLIMSLVGNCCVIWIF 82


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 293 TKSGIQLHIGTHYSTSLKGTLVVVCWRWETLSR 391
           T S + + +G H    L G L    W+++  S+
Sbjct: 359 TNSPVDMRVGIHTGAVLAGVLGQRQWQFDVYSK 391


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 133 EKIAISHISGSAVSLSQNGSTVTEPYGMFQSREQILPHTKGQLDMESGKTRDGHKVRH 306
           +K  IS  SGS  +    GST  +   +   R   LP  + +  + SG +  G    H
Sbjct: 345 DKKVISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSIRNRSGLVSGSSTPGTGREH 402


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 277 FRSPYPADPW 248
           FR P P +PW
Sbjct: 77  FRKPLPIEPW 86


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 277 FRSPYPADPW 248
           FR P P +PW
Sbjct: 77  FRKPLPIEPW 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,249
Number of Sequences: 438
Number of extensions: 4847
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)