Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26g12
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    60   2e-11
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    27   0.16 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = +3

Query: 228 LITGANSGIGLETAKALVKRKARVIFACRDIAKAKEVIAAIREEQPNGGEMIPMQLDLSS 407
           L+TGANSGIG    + LV +  +VI     + K K ++  ++ +    G+++P+Q DLS+
Sbjct: 11  LVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKP---GKLVPLQCDLSN 67

Query: 408 FESIENFVDIIKAGFHKIDVLINNAGVVVPLN-QDEKTKEGFEIHFGVNHLGHFYLTNLL 584
              I   ++ ++     ID+LINNA + + +  Q+++  +  +I F +N LG   +   +
Sbjct: 68  QNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKI-FDINLLGLTCMIQEV 126

Query: 585 LDHLKRATPSRIVIVS 632
           L  +K+   +  +IV+
Sbjct: 127 LKLMKKKGINNGIIVN 142


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 246 CLHRLSERFCLSDMYY*YICPNFWISVYVLIQSP 145
           C++  S   C++   + Y+CP   +S + L+ SP
Sbjct: 185 CIYVQSINLCMAGRLFGYLCPGMALSQFDLMGSP 218


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 69   NTDSFYIKNMVSAPVIYAAVPISVVVAIGLIRKLRSRNWG 188
            +T  FY    V  P+I A V + V V I  +R  RSR  G
Sbjct: 1603 STVPFYADVKVMLPLIVATVALVVAVVIVALR-WRSRYLG 1641


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 69   NTDSFYIKNMVSAPVIYAAVPISVVVAIGLIRKLRSRNWG 188
            +T  FY    V  P+I A V + V V I  +R  RSR  G
Sbjct: 1599 STVPFYADVKVMLPLIVATVALVVAVVIVALR-WRSRYLG 1637


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +3

Query: 333 EVIAAIREEQPNGGEMIPMQLDLSSFESIENFVDIIKAGFHKIDVLINNAGVVVPLNQDE 512
           + I  + E Q N  ++  ++L   S  + + FV  + AGF      ++NA   + LNQD 
Sbjct: 269 DFINMLMELQKNPQKLENIKLT-DSLIAAQAFVFFL-AGFETSSTTMSNALYELALNQDV 326

Query: 513 KTKEGFEIH 539
           + K   EI+
Sbjct: 327 QKKLREEIN 335


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 364 GCSSRIAAITSFAFAMSLHAKITRAFLLTKA 272
           GCSS+    TS AFA       +   LL +A
Sbjct: 894 GCSSKNGEPTSAAFAQGFATAASSPGLLERA 924


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 253 SDLKQLKPWLKEKPALSLHAETLQRRKKLLPQYERN 360
           ++ +  KPWL +   +S   +    RK + P +  N
Sbjct: 113 TEYRFFKPWLGDGLLISTGQKWRNHRKLIAPTFHLN 148



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 33  D*ILFSLHFTTTNTDSFYIKNMVSAPVIYAAV 128
           D I+F  H TT +  SF++  M   P I   V
Sbjct: 343 DTIMFEGHDTTASGSSFFLAVMGCHPDIQEKV 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,353
Number of Sequences: 438
Number of extensions: 4385
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)