Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26g06
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|...    81   1e-16
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    27   1.8  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    26   4.1  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   7.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   7.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   9.4  

>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 12/117 (10%)
 Frame = +2

Query: 107 MTSVHSAYKEEVHDVPMSVITRPFIPELDEAKVESLMET-----------IQKQEL-AGN 250
           MTS+H+     + ++ MS + RP  P LD  KV S+MET           +  ++L AG 
Sbjct: 1   MTSIHTGSNNNIVELDMSELIRPIPPVLDMNKVNSMMETMTGKTPPASCGLTSEDLEAGE 60

Query: 251 VPPIDILWIKGSQGGDYYYSFGGCHRFAAYKRLNRPTIPAKLIKSTVSDLKTYLGSS 421
           +PP+D+L  K S G  YY++FGGCHR  A+    R  +  KL+  + + L+ YLG+S
Sbjct: 61  LPPVDVLTFKKS-GKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLRLYLGAS 116


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 SNVGYHQALHSGAGRGQSGISHGNNTEARASRQRPANRHTLDQRLSRWRLLLQFRRM 321
           S+   HQ  HS  GRG+ G  HG   E R++     +RH    R+S+  L LQ RR+
Sbjct: 134 SSQSSHQR-HSRDGRGELGSEHG---ERRSAMDGLRDRHIRKVRVSQ-LLDLQRRRI 185


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 146 DVPMSVITRPFIPELDEAKVESLMETIQKQELAG-NVPPI 262
           +VP+ V     IP+ D  +V  +++T  K  L G N P I
Sbjct: 121 EVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPNCPGI 160


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 264 SIGGTLPASSCFCIVSMRDSTLASSSSGMKGLV 166
           +I G    S CF ++S + ST  S +    GLV
Sbjct: 179 AIAGKRARSLCFHVLSSKSSTFYSLTESKSGLV 211


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 194 EAKVESLMETIQKQELAGNVPPIDI 268
           E  ++ ++ET+Q + L  N+PP+ I
Sbjct: 910 EKAIDKIIETVQGECLQRNIPPLMI 934


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +2

Query: 116 VHSAYKEEVHDVPMSVITRPFIPELDEAKVESLMETIQK 232
           +HS      HD   +V+ RP I       +E  +E   K
Sbjct: 112 IHSLILPSAHDCSANVVDRPEISMSPRISIEEKLEIFSK 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,332
Number of Sequences: 5004
Number of extensions: 44043
Number of successful extensions: 113
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)