Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26g04
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    28   1.4  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   7.5  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   7.5  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   9.9  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    25   9.9  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.9  

>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/81 (22%), Positives = 36/81 (44%)
 Frame = +1

Query: 298 VGLVTRETDLNRVHGGMDKDSWCLNSDGTVRSDNVELYHLAPAPRESPTDELLVSTESPT 477
           +G V  ET+LNR++ G+  ++     +G    + ++  H A + R   T   L     P+
Sbjct: 1   MGTVVGETELNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTSSQL---NQPS 57

Query: 478 HTENEKIENEKKDVSAAAVMP 540
           +       +E+  V ++   P
Sbjct: 58  NYHMHSSLHEEVSVGSSIASP 78


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 433 ESPTDELLVSTESPTHTENEKIENEKKDVSAAAVMPLEG--DTIGVAYDHVELNFFLNGK 606
           E   DE LV  ESP  + N+K +N+KK         + G  D    + D+ +L    + K
Sbjct: 75  EEEQDEPLVEGESPIVSTNKKAKNKKKKKKQQKKKKVTGKRDLDNQSSDNEKLEGLESSK 134

Query: 607 NME 615
           N++
Sbjct: 135 NID 137


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 226 LGNTPLLQNK--AYFEVKLQQGGVW 294
           +G  P ++NK  AY  ++L + GVW
Sbjct: 289 VGGVPSIRNKIRAYLNIRLLRNGVW 313


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 130 IKENPVQLDTLHMGNEMVIIKGGQRVC 210
           I  + V +D  H+ NEM+  KGG   C
Sbjct: 351 ISRDLVSVDICHIFNEMIFGKGGHLHC 377


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 416 KWYNSTLSLLTVPSLFKHHESLS 348
           KW+N+ LS   +PS+F   + LS
Sbjct: 16  KWFNTKLSSRDLPSVFDLRKDLS 38


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 165 M*SI*LYWIFFDSNRYARCKCEP 97
           M SI LY I+FD +R  R +C P
Sbjct: 1   MPSIILYPIYFDKSRPRRFRCVP 23


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 433 ESPTDELLVSTESPTHTENEKIENEKKDVSAAAVMPLEGDTIGVAYDHVEL 585
           E+P   LL + E  ++  N +I +  KDV    +   +  ++ ++Y   +L
Sbjct: 485 ENPISSLLPALEQLSNYSNREISDLAKDVYKTLIQSKDDYSLALSYTQSDL 535


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 410 YNSTLSLLTVPSLFKHHESLSMPP*TLLRSVSLVTRPTAH 291
           +NST +  TVP     + + ++PP T L + +    PT H
Sbjct: 77  HNSTTT--TVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTH 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,067
Number of Sequences: 5004
Number of extensions: 57404
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)