Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26f23
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 309 2e-85
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 309 2e-85
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 151 8e-38
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 103 2e-23
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 52 7e-08
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 45 1e-05
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 30 0.23
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 29 0.54
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.54
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 0.54
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.2
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.6
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.9
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 2.9
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.8
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 5.0
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 6.6
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 6.6
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 8.8
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 309 bits (759), Expect = 2e-85
Identities = 146/206 (70%), Positives = 169/206 (82%)
Frame = +1
Query: 1 KTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 180
K+GT+TT + AHNMKVMKFSVSPVV+VAVE KN DLPKLVEGLKRL+KSDP V C E
Sbjct: 465 KSGTLTTSEVAHNMKVMKFSVSPVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCTTSE 524
Query: 181 SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHN 360
SGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+V+E S LSKSPNKHN
Sbjct: 525 SGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHN 584
Query: 361 RLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 540
R+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N
Sbjct: 585 RIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGAN 644
Query: 541 ILVDCSKGVQYLNEIKDSVVAGFQWA 618
++VD +K V YLNEIKDSVVA F WA
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWA 670
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 309 bits (759), Expect = 2e-85
Identities = 146/206 (70%), Positives = 169/206 (82%)
Frame = +1
Query: 1 KTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 180
K+GT+TT + AHNMKVMKFSVSPVV+VAVE KN DLPKLVEGLKRL+KSDP V C E
Sbjct: 465 KSGTLTTSEVAHNMKVMKFSVSPVVQVAVEVKNGNDLPKLVEGLKRLSKSDPCVLCTTSE 524
Query: 181 SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHN 360
SGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+V+E S LSKSPNKHN
Sbjct: 525 SGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHN 584
Query: 361 RLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 540
R+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N
Sbjct: 585 RIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGAN 644
Query: 541 ILVDCSKGVQYLNEIKDSVVAGFQWA 618
++VD +K V YLNEIKDSVVA F WA
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWA 670
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 151 bits (366), Expect = 8e-38
Identities = 74/186 (39%), Positives = 111/186 (59%), Gaps = 4/186 (2%)
Frame = +1
Query: 70 VVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEE 249
V +VAVEP NP++LPKL++GL++ KS P+ EESGEH + G GE++++ L DL
Sbjct: 600 VFKVAVEPHNPSELPKLLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRT 659
Query: 250 DHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVN 429
++ I I+ SDPV + ET + S C S +PNK NR+ M +P+ G+ DI+ G+VN
Sbjct: 660 LYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVN 719
Query: 430 PRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGV----QYLNEIKDSV 597
K + + + Y++D+ +R IW FGP+ G NIL D + LN +K+ +
Sbjct: 720 INWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYI 779
Query: 598 VAGFQW 615
GFQW
Sbjct: 780 KQGFQW 785
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 103 bits (247), Expect = 2e-23
Identities = 52/114 (45%), Positives = 71/114 (62%)
Frame = +1
Query: 1 KTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 180
+T T+ + N N+ + + P+VRVA+EP P ++ KLV GL L ++DP VQ EE
Sbjct: 540 RTATLCSSPNGPNLVGVTQQMEPIVRVALEPVRPFEMNKLVTGLDMLNQADPCVQIAVEE 599
Query: 181 SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSK 342
+GEH++ AGE+HLE CLKDL E A I I+ S P+V YRET D L +K
Sbjct: 600 NGEHVIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNK 653
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 436 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSK 561
+ F R L E+ D+ E + I FGP+ GPNIL D +K
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTK 769
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 52.0 bits (119), Expect = 7e-08
Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +1
Query: 10 TITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESG 186
T T ++ M M F PV+ ++++PK+ D + L R + DP + ++ ES
Sbjct: 456 TFTDGSVSYTMTSM-FVPEPVISLSLKPKSK-DTTSFSKALNRFQREDPTFRVQLDNESK 513
Query: 187 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEE 318
E I++G GELHLE+ ++ + ++ + + P V++RET++++
Sbjct: 514 ETIISGMGELHLEVYVERMRREYK-VDCETGKPRVAFRETLSKK 556
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +1
Query: 67 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDL 243
PV ++EP + D P L+E L + + DP + + E+G+ ++ G G +HL++ + L
Sbjct: 443 PVCIASIEPYSLKDEPALLEALANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERL 502
Query: 244 EEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHN 360
+ V YRET+ + S + NK N
Sbjct: 503 VSEFGA-RASLGKVQVGYRETLIDVSFNSVTLSTENKEN 540
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 232 LKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 390
+K LEE+ + +K SD V + ++ + P +++FM PMP
Sbjct: 287 VKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPMP 339
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +1
Query: 100 PADLPKLVEGLKRLAKSD--PMVQCINEESGEHIVA----GAGELHLEI 228
P D+ KL EGL++L + D +VQ +NE + GE H+++
Sbjct: 172 PVDMDKLAEGLQKLQEDDLLQVVQMVNENKTPDMYVRNDIEGGEFHIDL 220
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 29.1 bits (62), Expect = 0.54
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 317 SSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 150
S T YDTTG+D ++ SS R WS+ P +P ++ I+ T GS
Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 29.1 bits (62), Expect = 0.54
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 172 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPN 351
+EE+ + A E C++DL++ + K+SD Y T+ ++KS
Sbjct: 198 DEETLHELFPNASEF---TCVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVK 248
Query: 352 KHNRLFMKAQPMPDGL 399
KHN+L K +P+P L
Sbjct: 249 KHNKLVKKHKPLPSTL 264
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 1.2
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Frame = +1
Query: 151 DPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 330
D ++ I E+ ++ + L E ++ + E I + + + +++ D
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNF 472
Query: 331 CLSKSPNKHNRLFMKAQPMPDGLPEDI---DEGRVNPRDDFKTRARYLTEKYEYDVTEAR 501
+ + + L +P+ EDI +E + R+ + Y + + VT ++
Sbjct: 473 RFALGSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSK 532
Query: 502 KIWCFGPEGTGPNIL 546
+ FGP GTG +L
Sbjct: 533 GVLFFGPPGTGKTLL 547
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 223 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 354
E+C +LE+D I +S +S + A++ DQL S + +K
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 2.9
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +1
Query: 217 HLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDG 396
HL++CL D +E+ + K + E S +L LSK + + + M
Sbjct: 475 HLKLCLSDSQEELLQLNAKLEKANIVIDEL---NSAKLKLSKQVEEESSMKDDLTEMNQR 531
Query: 397 LPEDID--EGRVNPRDDFKTRARYLTEKYEYD 486
L E I+ E VN +T + T K +Y+
Sbjct: 532 LKEQIESYENEVNSEITSRTLKEFETLKTQYE 563
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 525 LGAKAPNLTGFGNIIFVLFCKIPSAS 448
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 397 LPEDIDEGRVNPRDDFKT 450
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 399 QTIRHGLSLHEQTVVLVGRL*E 334
+++RH +SL+E+T + +GRL E
Sbjct: 324 ESVRHLISLNEETWIQIGRLAE 345
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 493 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 582
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 215 SSPAPATMCSPDSSL--IHCTMGSDLARRLRPS 123
S+ +P+T+CSPD+++ ++ G L ++ P+
Sbjct: 403 SNVSPSTICSPDNNVTFVNLAPGEKLTFKIEPN 435
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.6
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +1
Query: 94 KNPADLPKLVEGLKRLAKSDPMVQC-INEES--GEHIVAGAGELHLEICLKDLEEDHACI 264
K P +P L KR KS QC I +E + G G+L+ + + + D + +
Sbjct: 16 KEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLYNKASILQMLLDRSSV 75
Query: 265 PIKKSDPVVSYRETV 309
P K + S ++ V
Sbjct: 76 P-KSPSHIKSLKDVV 89
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 298 RETVAEESDQLCLSKSPNKHNRLFMKAQP 384
R T EE + L+KSP+ HNR+ P
Sbjct: 466 RLTDDEEREIRALAKSPDIHNRIIASMAP 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,182
Number of Sequences: 5004
Number of extensions: 59317
Number of successful extensions: 212
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -