Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f20
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    33   0.051
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    29   0.63 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    29   0.63 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   1.9  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   3.4  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   4.4  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    26   5.9  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    26   5.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   7.8  

>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 32.7 bits (71), Expect = 0.051
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 486 IGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIFGFAASMAPSYISLAI 629
           +G++  + VW   ADT GRR           +F   A  +P++ S+ +
Sbjct: 129 LGLLVGAMVWSLSADTIGRRWAFNLTFLFTGVFAVIAGASPNFASICV 176


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +3

Query: 444 LTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIFGFAASM--APSYI 617
           L++A QGLL+ +  +G +F   +    AD  G+R +++    V  I G    +   PS++
Sbjct: 57  LSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAV-YIIGIIVQVTAVPSWV 115

Query: 618 SLAILK 635
            + + K
Sbjct: 116 QIMVAK 121


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +3

Query: 447 TTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSI-FGFAASMAPSYISL 623
           ++A QGL++ +  +G  F  ++     D  G+RT+++F   V  I      +  PS++ +
Sbjct: 54  SSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQI 113

Query: 624 AILK 635
            + K
Sbjct: 114 MVAK 117


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 268 IKAIFQIFS-IRLDPYKNQCSSLLLSNFALPLELALFHLEK*FFYVLSVISVREF 107
           I AI +I+  I L PY  + + LL SNF   L L LF +     ++ S+ +VR F
Sbjct: 613 IFAIARIYRCILLIPYTRKIAKLLFSNFKQLLNLMLFLVI--VLFIASLCAVRLF 665


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/67 (25%), Positives = 28/67 (41%)
 Frame = +3

Query: 405 FSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVGSIF 584
           FSV   A+     ++     L   + L G +    VW   ++  GR+  LL  M    IF
Sbjct: 154 FSVPAEAITTIFHISLTVSLLTMTVFLCGYIAGPIVWAPLSELSGRKLPLLIGMFGFGIF 213

Query: 585 GFAASMA 605
             + ++A
Sbjct: 214 NISVAVA 220


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 23/98 (23%), Positives = 42/98 (42%)
 Frame = +3

Query: 342 NIIMLTSCCLIILAMYMDIFGFSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGF 521
           N+ ++ S CL        IF  +V    V   +  T A  G+  ++ ++G      VW  
Sbjct: 76  NVAVMGSACLCA-GFGSSIFSGAVPEVMVKFHVCRTVALLGI--SLYVLGFASGPVVWAP 132

Query: 522 CADTRGRRTTLLFAMPVGSIFGFAASMAPSYISLAILK 635
             +  GRR  ++ A+ +  IF  A + A    ++ I +
Sbjct: 133 MCELFGRRRPMIIAVFIFCIFHIAVATAKDIQTVMICR 170


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +2

Query: 443 PYDRRTRSTLCYTVDWCYVLVLCVGLLR*YKGSSNHSSIRDASRIYLRLRSQHGAFLYLA 622
           P D R  S L  T+D+ + ++L    LR       H+ +RD +R   +  S   +F   +
Sbjct: 125 PSDVRPPSILKNTIDYLFKVILDRYSLR-----EAHAFVRDRTRAVRQDFSVQSSFSQDS 179

Query: 623 SYIEIFVSQFYII 661
            Y    +++F+II
Sbjct: 180 VYCHELIARFHII 192


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 18/80 (22%), Positives = 37/80 (46%)
 Frame = +3

Query: 396 IFGFSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCADTRGRRTTLLFAMPVG 575
           +F  +  + A    + LT A  G+  ++ + G      +W   ++  GR+  L+  M + 
Sbjct: 116 VFSAAATIFAAKYHIGLTVALLGM--SLYVCGFASGPILWAPISELVGRKIPLIVGMFMF 173

Query: 576 SIFGFAASMAPSYISLAILK 635
           SIF  A ++A    ++ I +
Sbjct: 174 SIFSIAVAVAKDVQTVMICR 193


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
 Frame = +3

Query: 357 TSCCLIILAMYMDIFG--FSVVMPAVACDMDLTTAEQGLLSAIPLIGVMFSSYVWGFCAD 530
           T+C L  +A+        F+V   A+     ++     L   + L+G      +W   ++
Sbjct: 137 TTCILAYVALCSSFASSVFAVPAEAITTVFHISLTVSLLTMTVFLLGYCSGPIIWAPLSE 196

Query: 531 TRGRRTTLLFAMPVGSIFGFAASM 602
             GR+  +L  M    IF  + ++
Sbjct: 197 LSGRKPPILIGMLGFGIFNISVAV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,103
Number of Sequences: 5004
Number of extensions: 52410
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)