Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f18
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subu...    38   5e-04
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   1.6  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   3.7  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    24   6.4  
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo...    23   8.5  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    23   8.5  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    23   8.5  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    23   8.5  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   8.5  

>SPCC1682.01 |qcr9||ubiquinol-cytochrome-c reductase complex subunit
           10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 85

 Score = 37.5 bits (83), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +3

Query: 81  STLNRTVFKRTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN 245
           ST+    F+R S+F   +    FF +  F++ + S+++  N G  W ++K ++ N
Sbjct: 22  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGLTWDEVKPRFLN 76


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 169 SNVLSKKNVPPATAKANVDVRLKTVRFNVDHTDILKIFSR 50
           SN  S+K VPP+  +        T R   D+TD    FSR
Sbjct: 455 SNTTSRKGVPPSKRRRVRGGNNATSRTTSDNTDANDSFSR 494


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 108 RTSTFALAVAGGTFFFERT 164
           R ST   A A GTFFF R+
Sbjct: 10  RCSTALSAAAAGTFFFRRS 28


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 56  ENFQNVRVVYIKSYCFQTYIYVCFGCCRRNV 148
           E ++  R   I ++   + +Y+ F  CRRN+
Sbjct: 88  EVYKEYRDFMISTFRLNSKVYLTFTACRRNL 118


>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
           VI|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 108 RTSTFALAVAGGTFFFERTFELVSQSIFENLNKGKLWKDIKHKYEN*IVNVQ 263
           +T  F++A AG +  F+  F   ++ +  + N G   ++I  KY +   NVQ
Sbjct: 9   QTGRFSVA-AGPSVRFQAGFLAANRQVRFSSNHGVSLEEINTKYNDFFSNVQ 59


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 24  SSFDEKSDFLEKIFKMSVWSTLNRTVF 104
           SSF+  +DFL + FK  +++ ++  +F
Sbjct: 6   SSFERGTDFLNRNFKKCLFACISIFIF 32


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 30  FDEKSDFLEKIFKMSVWSTLNRTVFKRTSTFALAVAGGTFFFERTFEL 173
           +D   DFL+  F +S  STL   +   T    + VAG      R   L
Sbjct: 375 WDLTEDFLDLSFSLSRLSTLQAAIIFLTGRPWINVAGNWSILTRAIAL 422


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 168 ELVSQSIFENLNKGKLWKDIKH 233
           E+ +++I++ LNK ++ K+ KH
Sbjct: 621 EIYNETIYDLLNKAEMLKNPKH 642


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 56  ENFQNVRVVYIKSYCFQTY 112
           + F  V +VYI S+CF  Y
Sbjct: 204 KEFSEVDIVYICSFCFCYY 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,930
Number of Sequences: 5004
Number of extensions: 22323
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)