Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f13
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    27   1.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.7  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   6.2  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   6.2  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   6.2  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.3  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +3

Query: 414 LVVSENYDSISNFLTHYDAYMASPID-----TLKEFYQKYNPPIR 533
           ++VSEN  + SN L+ Y+A  AS  D      L+ +   Y PPIR
Sbjct: 188 ILVSENATAGSNSLSSYNACPASDADDFTTPALEAWRNVYMPPIR 232


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 542 FVGADRRVIFLVKFFQGVDRGSHVSVVVRQEVANGIIVFGN 420
           F G   +      FFQG+  G+H++   R  V   + VFG+
Sbjct: 336 FQGGVSQFFLYSVFFQGLWFGNHLATTKRVNVGQVVTVFGS 376


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 438 SISNFLTHYDAYMASPIDTLKEFY 509
           SISN +  +D YMA  +    EF+
Sbjct: 428 SISNIIRMWDTYMAEGVQGFSEFH 451


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 384 VAKAEV-LLSRLVVSENYDSISNFLTHY 464
           V K E+  L++ +V +    ISNFLTHY
Sbjct: 41  VPKIEMNFLNKPIVPDTTKVISNFLTHY 68


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = -2

Query: 434 IVFGNHETTQQYLGFGDQLLVLTESEVQSRTGCPPARRRQGVVGRPATGIILVPG 270
           ++ G ++  +       + L+ +++E+Q       A R +  + RPA+  IL PG
Sbjct: 209 LLIGENQDAENTADTSKRGLLTSQTEIQFFKAAHSALRLKASMTRPASNAILQPG 263


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 452 PDALRRLHGFPYRHPERILPEI 517
           P+ +R ++GF +  PE+I+ E+
Sbjct: 419 PEIIREMNGFDFGPPEKIVREL 440


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 405 LSRLVVSENYDSISNFLTHYDAYMASPIDTLKEFYQKYNPPIRAHKHTCVGLGMESHQTL 584
           L  + ++EN  +I   ++ Y+A + SP + L +  ++   P +A +       M+ H  L
Sbjct: 461 LLSISLNENVRAIHKLISRYEARIVSP-EILTKIQEQVENPCKAAREVLEKKQMKRHDYL 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,147,888
Number of Sequences: 5004
Number of extensions: 35790
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)