Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f13
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0307 - 22250221-22250482,22250664-22250758                       29   3.7  
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194...    28   4.8  
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332     28   6.4  
01_06_1219 - 35490475-35491635                                         27   8.5  
01_06_0898 - 32832665-32832724,32832761-32832815,32832957-328331...    27   8.5  

>11_06_0307 - 22250221-22250482,22250664-22250758
          Length = 118

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 177 PTAPTVSTSGEARAIRRIVGRWGAEWLS*LGSRHQDNAGSW 299
           P +P+   SG+A     + GRWG    S +G  H  N G+W
Sbjct: 11  PRSPSRRPSGDAADEGGVAGRWG----SLVGFFHNHNHGAW 47


>04_03_1002 -
           21617339-21617362,21618476-21618565,21618755-21619432,
           21619536-21619772,21619849-21619896,21619995-21620045,
           21620301-21620426,21620557-21620697,21621165-21621401,
           21622467-21622571,21622812-21622982,21623306-21623380,
           21623754-21623936,21624151-21624297,21624365-21624472,
           21624605-21624709,21625109-21625213,21625322-21625381,
           21625512-21625579,21625876-21625954,21626208-21626267,
           21626445-21626498,21626834-21626886,21627405-21627494,
           21628265-21628362,21628464-21628852
          Length = 1193

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 298 GRPTTPCRRRAGGHPVRLCTSLSVNTRSWSPKP 396
           GRPTTP    AGG P     + + +T   S +P
Sbjct: 59  GRPTTPSSSSAGGRPTTPSAAFARSTTPSSGRP 91


>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
          Length = 524

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 579 FDDFPCPDPRRCVCGRGSA 523
           F    C DP RCVC RGS+
Sbjct: 286 FSQSYCADPVRCVCVRGSS 304


>01_06_1219 - 35490475-35491635
          Length = 386

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 313 PCRRRAGGHPVR--LCTSLSVNTRSWSPKPRYC*VVSWFP 426
           P  R++  HPV+  L   +++N R     PR C ++ +FP
Sbjct: 200 PTARQSNDHPVQVQLLPRININGRDEQMSPRACGLMVFFP 239


>01_06_0898 -
           32832665-32832724,32832761-32832815,32832957-32833135,
           32833218-32833328,32833600-32833647,32833810-32833949,
           32834402-32834539,32834660-32834804,32834936-32835002,
           32835226-32835329,32835444-32835647
          Length = 416

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 RRAGGHPVRLCTSLSVNTRSWSPKPRY 402
           RR  G     C S S N+  W+P P Y
Sbjct: 86  RRIDGGAASSCASTSSNSGRWAPSPAY 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,590
Number of Sequences: 37544
Number of extensions: 281636
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)