Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f08
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...   123   2e-29
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   1.6  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   2.2  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   3.8  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   6.6  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   6.6  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   6.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.8  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score =  123 bits (296), Expect = 2e-29
 Identities = 68/155 (43%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
 Frame = +3

Query: 156 RILELYSGIGGMHCAWNESTIKGKVVAAIDINTVANDVYKYNFPETLLFTKNIQSLTPIE 335
           R+LELYSGIGGMH A N + I   +V AIDIN  AN++Y  N  + L    +I +LT  +
Sbjct: 8   RVLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGK-LAKHMDISTLTAKD 66

Query: 336 IEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKLNTL-QYILMENVKGF 512
            + +      MSP CQPFTR G   D  DPR+ +FL  +++L  +N L +YIL+ENV+GF
Sbjct: 67  FDAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGF 126

Query: 513 ECSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNS 617
           E S       + L  CG+   E +LSP    +PNS
Sbjct: 127 EESKAAEECRKVLRNCGYNLIEGILSPNQFNIPNS 161


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 507 GFECSTVRNLFVEKLTYCGFVYQEFMLSPVS 599
           GF CS   ++F E   +C   + +F + P+S
Sbjct: 262 GFVCSVCLSIFCEPRVHCSTCHTKFTVEPMS 292


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 159 FCVPFFPPSLSLHLQKKNISQ 97
           FCVPFF  S  +H   K++ Q
Sbjct: 12  FCVPFFSKSARIHTLSKDVFQ 32


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = -2

Query: 505  LTFSIKIY*RVFNLSNISMKYKNELVLGSFSSKFFPLRVKGWQGGDMRTV-----SILYF 341
            +TF+  ++  +FN      + K+   LG FS++ F + V G   G    V       ++ 
Sbjct: 793  MTFTCFVFFDMFNALACRSETKSVFKLGIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQ 852

Query: 340  SISIGVKDCIFLV 302
            + +IG+KD + L+
Sbjct: 853  TEAIGLKDVLILL 865


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 459 LDKLNTLQYILMENVKGFECSTVRNLFVEKLTY 557
           L KL  L+  L++NV GF       LFV +  Y
Sbjct: 378 LKKLIKLRQFLVDNVSGFTTELSNMLFVNEHVY 410


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 441 LYFIDILDKLNTLQYILMENVKG 509
           L +I ILDK +  +YILME+  G
Sbjct: 236 LQYIKILDKDSNKKYILMESCLG 258


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 GKVVAAIDINTVANDVYKYNFPE 290
           G V +A+ ++     VYK NFPE
Sbjct: 283 GDVSSAVSLSRKLTSVYKINFPE 305


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/61 (21%), Positives = 31/61 (50%)
 Frame = -2

Query: 526  TVEHSNPLTFSIKIY*RVFNLSNISMKYKNELVLGSFSSKFFPLRVKGWQGGDMRTVSIL 347
            T EHS+P+TF + ++     L+ ++ ++ ++ ++      +   + +  +     TVS L
Sbjct: 1764 TYEHSDPITFDLSVF--CHKLATLASQFNDDALI-ELLDTYLKRKFRSIKDFLKHTVSYL 1820

Query: 346  Y 344
            Y
Sbjct: 1821 Y 1821


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,438
Number of Sequences: 5004
Number of extensions: 56417
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)