Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26f08
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430... 128 3e-30
11_01_0056 + 427376-427408,427589-427694,427777-427823,427907-42... 33 0.14
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 33 0.18
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 32 0.42
08_01_0914 + 9010613-9013316,9013537-9013748 31 0.55
03_01_0074 + 610948-611184,611745-611867,611983-612082,612167-61... 30 1.3
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 29 3.0
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 29 3.9
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 3.9
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 28 5.2
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 28 5.2
07_03_0698 - 20765305-20768526 27 9.0
>01_05_0681 -
24242485-24242560,24242721-24242785,24242874-24243029,
24243073-24243121,24243291-24243366,24243456-24243666,
24244038-24244160,24244245-24244363,24244439-24244532,
24245123-24245233,24245336-24245392
Length = 378
Score = 128 bits (309), Expect = 3e-30
Identities = 68/162 (41%), Positives = 96/162 (59%), Gaps = 1/162 (0%)
Frame = +3
Query: 135 MEEKMEHRILELYSGIGGMHCAWNESTIKGKVVAAIDINTVANDVYKYNFPETLLFTKNI 314
ME + ++LE YSGIGGM + S + +VV A DIN VANDVY+ NF + NI
Sbjct: 1 METAVPWKVLEFYSGIGGMRYSLAASGARAEVVEAFDINDVANDVYELNFGHR-PYQGNI 59
Query: 315 QSLTPIEIEKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDKL-NTLQYIL 491
Q+LT +++KYK L+SPPCQP+TR G D R SF+ ++++ + Q +
Sbjct: 60 QTLTASDLDKYKAQAWLLSPPCQPYTRQGLQKHSADARAFSFIKILNLMKNMCFPPQMLF 119
Query: 492 MENVKGFECSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNS 617
+ENV GFE S + +E L+ F QEF+LSP+ G+P S
Sbjct: 120 VENVVGFEVSDTHDQLIEVLSDLNFNTQEFILSPLQFGIPYS 161
>11_01_0056 +
427376-427408,427589-427694,427777-427823,427907-428065,
429018-429092,429379-429973,430529-430943,431105-431118,
431476-431591
Length = 519
Score = 33.5 bits (73), Expect = 0.14
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Frame = +3
Query: 159 ILELYSGIGGMHCAWNESTIKGKVVAAIDIN----TVANDVYKYNFPETLLFTKNIQSLT 326
+L L+SGIGG A + I K V ++I+ T+ + TL+ ++Q+LT
Sbjct: 356 VLSLFSGIGGAEVALHRLGICMKTVVLVEISEVNMTLLRSWWDQTQTGTLIEIADVQNLT 415
Query: 327 PIEIEKY-----KIDTVLMSPPCQPFT-RNGKNLDENDPRTNS-FLYFIDILDKLNTL 479
IE + D V+ PC N + D + + ++ F ++ ILD + T+
Sbjct: 416 AERIELFIRRFGGFDLVIGGSPCNNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTI 473
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +3
Query: 351 IDTVLMSPPCQPFTRNGKNLDENDP----RTNSFLYFIDILDKLNTLQYILMENV 503
+D + PPCQ + + NDP + + F+DI+ L +Y+LMENV
Sbjct: 627 VDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRP-KYVLMENV 680
>05_03_0031 -
7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 31.9 bits (69), Expect = 0.42
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 129 STMEEKMEHRILELYSGIGGMHCAWNESTIKGKVVA----AIDINTVANDVYKYNFPET 293
S + EKME +L+LY G GGM G V AID + +A + ++ N PET
Sbjct: 822 SPVLEKMELSLLDLYCGCGGMSTGLCLGARGGGVNLSARWAIDDDEIACESFRNNHPET 880
Score = 30.7 bits (66), Expect = 0.97
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 321 LTPIEIEKYKIDTVLMSPPCQPFTRNGKNLDENDP----RTNSFLYFIDILDKLNTLQYI 488
L P + +D V PPCQ + +N + P + + F+D++ L +Y+
Sbjct: 1010 LRPSKFPLGDVDVVCGGPPCQGISGYNRNREFEAPFKCEKNKQIIVFMDVVQFLKP-KYV 1068
Query: 489 LMENV 503
MENV
Sbjct: 1069 YMENV 1073
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +2
Query: 50 LHIIVFCIVSSASSSHCDMFFFC----KCKLN 133
LH+++FCIV + SS C M +C K KLN
Sbjct: 656 LHVLIFCIVGTLISSMCCMTAYCFIKRKMKLN 687
>03_01_0074 +
610948-611184,611745-611867,611983-612082,612167-612213,
612292-612450,613033-613132,613209-613300,613390-614532,
614949-615041,615408-615493,615746-615873,615965-616086,
616202-616270,616380-616518,616624-616686,616887-616930,
617339-617425
Length = 943
Score = 30.3 bits (65), Expect = 1.3
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Frame = +3
Query: 159 ILELYSGIGGMHCAWNESTIKGKVVAAIDINTVANDVYKYNFPE----TLLFTKNIQSLT 326
+L L+SGIGG A + I K V +++ + V + K + + TL+ +++ LT
Sbjct: 554 VLSLFSGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLT 613
Query: 327 PIEIEKY-----KIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYF 449
IE + D V+ PC + ++ + +S L++
Sbjct: 614 TERIETFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFY 659
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 339 EKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIDILDK 467
++ K+ L+SP +P R+ K + N+P L+ I I DK
Sbjct: 405 DRLKLFPNLLSPSTRPLLRSNKRVVTNNPSVKVRLWSIQISDK 447
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +3
Query: 159 ILELYSGIGGMHCAWN-ESTIKGKVVA---AIDINTVANDVYKYNFPET 293
+L+LYSG GGM + + G + A+D N+ A + KYN P T
Sbjct: 315 LLDLYSGCGGMSTGLCLGAALAGLNLETRWAVDFNSFACESLKYNHPRT 363
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 357 TVLMSPPCQPFTRNGKNLDENDP 425
T SPP QP TRN +N + N P
Sbjct: 274 TTSQSPPRQPSTRNPRNRNRNPP 296
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 471 NTLQYILMENVKGFECSTVRNLFVEKLTYCGFVYQ 575
NT +Y L+E+ E ++ + EK +CG+++Q
Sbjct: 810 NTEKYKLIEDFFNLEIASDASEICEKTAFCGYIFQ 844
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.3 bits (60), Expect = 5.2
Identities = 27/111 (24%), Positives = 47/111 (42%)
Frame = +3
Query: 225 KVVAAIDINTVANDVYKYNFPETLLFTKNIQSLTPIEIEKYKIDTVLMSPPCQPFTRNGK 404
K+V+ I + DV + + + K I+ IE + D +++ C+ N
Sbjct: 4705 KIVSEISQKPINEDVV-LSSEQAMEGDKKIELDANIEGNIVRNDIEMVTHNCE-ICDNCA 4762
Query: 405 NLDENDPRTNSFLYFIDILDKLNTLQYILMENVKGFECSTVRNLFVEKLTY 557
N E D +S ++D NTL YI+ E + G E ++ V L +
Sbjct: 4763 NTMEEDTNGSSHNSPTHVMDSSNTLIYIIKEAITGDEEGIDSSILVTDLQH 4813
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 601 TLTGLNINS**TNPQ*VNFSTNKFRTVEHSNPLTFSIKI 485
+LT L + NPQ N K + EHSN +TF++K+
Sbjct: 1031 SLTHLELKGGTCNPQ--NLEKLKRKVSEHSNGITFTLKL 1067
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,253,869
Number of Sequences: 37544
Number of extensions: 295673
Number of successful extensions: 583
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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