Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26f07
(665 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1221 - 28514952-28518152 31 1.1
01_02_0093 - 11063514-11064755,11065364-11065483,11066459-11066785 31 1.1
06_03_0588 + 22567820-22570802,22570917-22571269 30 1.4
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071... 29 2.5
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397... 29 3.3
02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236 29 4.4
03_02_0134 + 5820068-5820178,5822439-5822508,5822893-5822939,582... 28 5.8
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 28 7.7
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = +2
Query: 431 TKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQI 610
T L F+ N IT IP E +K K++ LD+ Y N+ ++L+ +Q + LR N++
Sbjct: 566 TTLNFSDNGITGA-IPPEIVKL-KTLQVLDVSYNNLSGGIPPELSSLTRLQIVNLRWNRL 623
>01_02_0093 - 11063514-11064755,11065364-11065483,11066459-11066785
Length = 562
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 344 FKSADCFLFAEHVKPEDDTWTAFDYLKDVTKLTFTKNNITMKYIPTEALKY 496
F S C LF EH + D +A ++++++TKL K+ + + I LKY
Sbjct: 441 FDSKTCELFLEHYMGKGDMTSALNWVENMTKLPRKKSKLDQEKISC-FLKY 490
>06_03_0588 + 22567820-22570802,22570917-22571269
Length = 1111
Score = 30.3 bits (65), Expect = 1.4
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +2
Query: 419 LKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLR 598
L D+T+L + N+ IP+E + + + LDI ++E + S +QEI L
Sbjct: 100 LTDLTRLQLSNNSFRGS-IPSE-IGFLSKLSILDISMNSLEGNIPSELTSCSKLQEIDLS 157
Query: 599 GNQIKILEVNAFADHKDLAIL 661
N+++ +AF D +L L
Sbjct: 158 NNKLQGRIPSAFGDLTELQTL 178
>09_02_0610 -
11206198-11206588,11206812-11207001,11207116-11207184,
11207546-11207672,11207809-11208128,11208196-11208353,
11208503-11208580,11209484-11209555,11209994-11210135,
11212580-11213064,11214362-11214947,11215093-11215177
Length = 900
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 497 TKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQI 610
T +++LD+ N++ V + F L+A+ + L GNQ+
Sbjct: 427 TSRIISLDLSQSNLQGVVSINFTFLTALNYLNLSGNQL 464
>06_01_0558 -
3968211-3969475,3970198-3970266,3970374-3970529,
3971075-3971405
Length = 606
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/36 (33%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +2
Query: 557 AFANLSAVQEITLRGNQIK-ILEVNAFADHKDLAIL 661
+FAN++ +++++L NQ++ +L +N+F++H L L
Sbjct: 235 SFANMTLLEQLSLSHNQLEGLLLLNSFSNHLQLKYL 270
>02_02_0065 + 6490490-6491552,6491754-6493601,6493857-6494236
Length = 1096
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 452 NNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQI 610
NN IP+E T S+++L + Y ++ + NL ++ + LRGNQ+
Sbjct: 207 NNSLAGSIPSEIGNLT-SLVSLILSYNHLTGSVPSSLGNLQRIKNLQLRGNQL 258
>03_02_0134 +
5820068-5820178,5822439-5822508,5822893-5822939,
5823067-5823175,5823355-5823440,5823768-5823858,
5824204-5824289,5824649-5824762
Length = 237
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 446 TKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKILEV 625
TK N + + +P E L+ S+ LD+ I ++ L +Q + L GN ++ +
Sbjct: 30 TKINASREVVPNEVLQVGNSLRILDLTNNKIAEI-PQEVGTLVNMQRLVLAGNLVESIPA 88
Query: 626 N 628
N
Sbjct: 89 N 89
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 482 EALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQEITLRGNQIKIL 619
E ++ K V LD+ + + G N +Q++ L GNQI L
Sbjct: 265 EGIEILKGVKVLDLSFNEFKLPGFEPLENCKLLQQLYLAGNQITSL 310
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,487,098
Number of Sequences: 37544
Number of extensions: 289447
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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