Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f07
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.21 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +2

Query: 407 AFDYLKDVTKLTFTKNNITMKYIPTEALKYTKSVLNLDIKYGNIEKVGAYAFANLSAVQE 586
           AF    D+ +L  + N +T   +P +AL+    +  LD+    I      +F NL  +  
Sbjct: 426 AFRNCSDLKELDLSGNELTS--VP-DALRDLALLKTLDLGENRISNFYNGSFRNLDQLTG 482

Query: 587 ITLRGNQIKILEVNAFADHKDLAIL 661
           + L GN I  L      D  +L IL
Sbjct: 483 LRLIGNDIGNLSRGMLWDLPNLQIL 507


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 77  NETHSSNSLCPPRK 36
           NE H  N + PP+K
Sbjct: 421 NEDHDENMIIPPKK 434


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = -1

Query: 494  ISTPQSVYISW 462
            +S+PQ+++ISW
Sbjct: 1224 VSSPQALFISW 1234


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = -1

Query: 494  ISTPQSVYISW 462
            +S+PQ+++ISW
Sbjct: 1220 VSSPQALFISW 1230


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 98  HCTIQISNETHSSNSL 51
           +CTI I++ +H SN +
Sbjct: 172 NCTIHIASWSHGSNEI 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,891
Number of Sequences: 438
Number of extensions: 3508
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)