Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f06
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    31   0.16 
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.5  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   7.9  
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa...    25   7.9  

>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 72  EEQITQ-RLKHIHLDTNSSMQPKAEVPPMCPKSKLPLLHLTPSGGQKKIEGATPQS 236
           EEQ T+  LKH  LD N   +  AE+  +CP S L LLH   +G  +K E +  ++
Sbjct: 4   EEQRTRDELKHKLLDLNQLHEQLAELRTICP-SLLKLLH-PETGTSRKFEKSAQEA 57


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 376 NNTF-ILTSRVEKYPIPYGKNSWC*TFDC 293
           N+ F IL   +E+ P+PY  N+W  T  C
Sbjct: 320 NSLFRILDMEIERQPMPYPYNTWISTIRC 348


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 490 FLSIRLQRYTYIVMYTSWHIFVRLQKARVLTKWH 389
           FL+   QR   + +Y+SW I + L  AR+    H
Sbjct: 259 FLNSFNQRRNSLQLYSSWFIILILSDARIKENTH 292


>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 679 INNKQYSCSNYRQ*HTVYLITYSLIDYYRH 590
           +NN Q  C  Y+    V  I+ +LI+Y +H
Sbjct: 162 LNNAQRLCDTYKDHPWVQSISPTLINYIKH 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,559
Number of Sequences: 5004
Number of extensions: 58287
Number of successful extensions: 164
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)