Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26f02
         (115 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p...    27   1.8  
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ...    27   1.8  
AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    25   5.4  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    25   5.4  

>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
            protein Y102A5A.1 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 33   KKCNQKCFFTIM*SCLINMNISKF 104
            +KC  +C FT++ SC+  ++I++F
Sbjct: 1122 RKCAFECMFTLLESCVDKIDITQF 1145


>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
            protein Y102A5A.1 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 33   KKCNQKCFFTIM*SCLINMNISKF 104
            +KC  +C FT++ SC+  ++I++F
Sbjct: 1122 RKCAFECMFTLLESCVDKIDITQF 1145


>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 43  LHFLLVFSKKIFFF 2
           LHFLL F+ K++FF
Sbjct: 260 LHFLLAFTFKVYFF 273


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 43  LHFLLVFSKKIFFF 2
           LHFLL F+ K++FF
Sbjct: 250 LHFLLAFTFKVYFF 263


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 43  LHFLLVFSKKIFFF 2
           LHFLL F+ K++FF
Sbjct: 250 LHFLLAFTFKVYFF 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,861,408
Number of Sequences: 27780
Number of extensions: 16963
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 12,740,198
effective HSP length: 19
effective length of database: 12,212,378
effective search space used: 219822804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)