Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26f01
(575 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 118 8e-28
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 56 5e-09
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz... 41 1e-04
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni... 39 5e-04
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 29 0.49
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 3.4
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 3.4
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 26 3.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 3.4
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 26 4.5
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 7.9
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 7.9
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 25 7.9
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 118 bits (283), Expect = 8e-28
Identities = 53/109 (48%), Positives = 73/109 (66%)
Frame = +1
Query: 184 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVS 363
Q+C ECNNMLYPREDK ++VL ACRNCDY ++A ++ VY +++ E T ++ D +
Sbjct: 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDAST 64
Query: 364 DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
DPTLPR+ D CP+C+ EAVF+Q +RR + M L YVC C + E
Sbjct: 65 DPTLPRS-DKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 55.6 bits (128), Expect = 5e-09
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNK--IMHEVDELTHINPD 354
+QFC C N L D+ + + CR C Y S +Y EVD++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY-HFPISTFLYSRHEFAQKEVDDVLGGEEA 58
Query: 355 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
S+ T ++ KC++ A FFQ Q R A+E M +Y CT CK +W E
Sbjct: 59 FESNQQTEVTCENT--KCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108
>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC ++ ++Q QTR A+E M + CT C +RW
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 119
Score = 39.1 bits (87), Expect = 5e-04
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCD--YKQLADSNCVYVNK----IMHEVDELTHIN 348
FC EC N+L ++ C C Y +N V K +L H
Sbjct: 9 FCSECGNLL-----ESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSI 63
Query: 349 PDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 507
V S T + CPKC + F Q R A+E ++Y C C ++++
Sbjct: 64 VQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 29.1 bits (62), Expect = 0.49
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +1
Query: 223 EDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
ED L++ C+N ++ + K E DE+ + P+ V D
Sbjct: 469 EDAGGMDLIHECQNSSNSEIYQKAYNIIEKFFGEEDEIEELEPETVGD 516
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 536 LTMQKSSIYSVHLCLQLVHT*YNLISSSARLVWP 435
LT S S+HL +QL+H +L SS+ L+ P
Sbjct: 597 LTNSTSQNKSMHLQVQLLHIISSLCQSSSALILP 630
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.4
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 106 HFK-INSKEMSAISLSRKDGGPG 171
HF+ +S S SLSRKD GPG
Sbjct: 67 HFRPASSLSFSPSSLSRKDSGPG 89
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 570 ENKLYWYLLNKSYNAKELYLL 508
+ +YW L N Y +ELYL+
Sbjct: 882 QEMVYWTLRNGKYKTRELYLM 902
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 298 RNLNPQVVYNHNFCTRTAKLCYFYLRAGKAYCYI 197
+ L+PQ + + C++ + FY R GK YC++
Sbjct: 276 KKLHPQC-FKCDTCSQNLEHVGFYYREGKFYCHL 308
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 570 ENKLYWYLLNKSYNAKELYLL 508
+ +YW L N Y +ELYL+
Sbjct: 882 QEMVYWTLRNGKYKTRELYLM 902
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 160 GGPGYVGIQFCQECNNMLYPRE 225
G PG +C EC M Y R+
Sbjct: 62 GAPGVSDCYYCSECTRMEYDRD 83
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.0 bits (52), Expect = 7.9
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 164 VLVMSAYNFVKNVTICFTRA--KIKITKFCCTRAEIVIINNLRIQIAFTSTKL 316
+ +S F+ +T K K TK + +IV NLR AFT L
Sbjct: 67 IKTLSLKKFIPEITAAIVEGMMKCKATKDILSSVKIVWALNLRFSTAFTGPML 119
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 507 CPSMFTTCTHIIQSHFFFGASRLALKEYCFSVITL 403
CP+ F+ +HI + F L L FS +TL
Sbjct: 44 CPAKFSKISHIFKKTPLFDQKSLILYLLWFSTLTL 78
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.0 bits (52), Expect = 7.9
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 573 VENKLYWYLLNKSYNAKELYLLCPSMFT--TCT 481
++++LY YLL+K AK +Y L PS+ T CT
Sbjct: 176 LDHRLYTYLLSKGLTAK-IYAL-PSILTLSACT 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,029
Number of Sequences: 5004
Number of extensions: 44161
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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