Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26f01
(575 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0765 + 22980542-22980570,22980673-22980748,22981113-229812... 148 3e-36
03_01_0015 + 126611-126639,126718-127099 119 1e-27
07_01_0873 - 7257016-7257957,7260083-7260262 42 5e-04
03_06_0445 - 33982018-33982965,33984308-33984463 42 5e-04
03_05_0889 + 28543106-28543354,28544379-28544465,28544548-285446... 39 0.002
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 37 0.010
10_08_0500 - 18357828-18358649 34 0.093
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 29 3.5
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 29 3.5
03_05_0387 + 23708447-23708470,23708616-23708739,23709081-237092... 28 4.6
>12_02_0765 +
22980542-22980570,22980673-22980748,22981113-22981271,
22981370-22981450
Length = 114
Score = 148 bits (359), Expect = 3e-36
Identities = 64/112 (57%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 360
++FC+ECNN+LYP+ED++ K+LLYACRNCD++++AD+NCVY N + H E T + DV
Sbjct: 4 MKFCRECNNILYPKEDRDQKILLYACRNCDHQEVADNNCVYRNVVHHSAGEFTQVLQDVA 63
Query: 361 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
DPTLPRTK C C H EAVFFQ T R EE M L++VC SC HRW E
Sbjct: 64 GDPTLPRTKAVRCAVCGHGEAVFFQA-TARGEEGMTLFFVCCNPSCGHRWRE 114
>03_01_0015 + 126611-126639,126718-127099
Length = 136
Score = 119 bits (287), Expect = 1e-27
Identities = 59/134 (44%), Positives = 82/134 (61%), Gaps = 24/134 (17%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACRNCDYK----------------------QLADSN 294
++FC+ECNN+LYP+E+K+ ++LL+ACRNC+++ ++++S
Sbjct: 4 MKFCRECNNILYPKEEKDRRLLLFACRNCEHQVHTLIISIRLWRRRNLKKQQQQEVSESK 63
Query: 295 CVYVNKIMHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLY 474
CVY N++ H E T + DV SDPTLPRTK C C H EAVFFQ T R EE M L+
Sbjct: 64 CVYRNEVAHAAGERTQVLQDVASDPTLPRTKTVRCAACGHGEAVFFQA-TARGEEGMTLF 122
Query: 475 YVC--TSCKHRWTE 510
+VC +C HRW E
Sbjct: 123 FVCCNLTCAHRWRE 136
>07_01_0873 - 7257016-7257957,7260083-7260262
Length = 373
Score = 41.5 bits (93), Expect = 5e-04
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 382 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
T C +C R+ ++Q QTR A+E M + C +C + W
Sbjct: 330 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 370
>03_06_0445 - 33982018-33982965,33984308-33984463
Length = 367
Score = 41.5 bits (93), Expect = 5e-04
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 382 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
T C +C R+ ++Q QTR A+E M + C +C + W
Sbjct: 324 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 364
>03_05_0889 +
28543106-28543354,28544379-28544465,28544548-28544604,
28544704-28544781
Length = 156
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 382 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
T + C KC + E ++ Q R A+E ++Y C +C+H + E
Sbjct: 112 TVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNE 154
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
CP+C + EA + Q Q R A+E M +Y C C+ W E
Sbjct: 796 CPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 835
>10_08_0500 - 18357828-18358649
Length = 273
Score = 33.9 bits (74), Expect = 0.093
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 367 PTLPRTKDHMCPKCNHREAVF-FQGQTRRAEEEMRLYYVCTSCKHRWTE 510
P LPR CP+C F + R + Y+C +C+ WTE
Sbjct: 96 PPLPRPPPRQCPRCGSANTKFCYYNNYSRTQPR----YLCKACRRHWTE 140
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +1
Query: 115 INSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDK--NNKVLLYACRNCD-YKQLA 285
I S ++ I+L D G ++F Q C N+LY D + L +NC ++L
Sbjct: 1543 IGSSNLALIALKINDSGSSSDIVKFLQGCVNLLYLTIDSCIDLITLPEPIKNCHCLRKLE 1602
Query: 286 DSNCVYVNKIMHEVDELTHI 345
+NC + + + ELT +
Sbjct: 1603 ITNCWNFSVLPEWLGELTFL 1622
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Frame = +1
Query: 190 CQECNNMLYPREDKNNKVL--LYACRNCDYKQLADSNCVYVNKIMHEVD 330
C C N + P+ K K CR+CD + C KI H D
Sbjct: 342 CDSCGNRVPPKIAKKKKQAGEQLLCRHCDKLLQSKQYCGICKKIWHHTD 390
>03_05_0387 +
23708447-23708470,23708616-23708739,23709081-23709203,
23710723-23710820,23711778-23711918,23712236-23712361,
23713316-23713486
Length = 268
Score = 28.3 bits (60), Expect = 4.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEM 465
CPKC + +F +G +R EEM
Sbjct: 183 CPKCGEKSYIFGEGGGQRTAEEM 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,438,950
Number of Sequences: 37544
Number of extensions: 253191
Number of successful extensions: 599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -