Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26f01
(575 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit... 201 1e-51
BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DN... 201 1e-51
BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DN... 201 1e-51
AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA ... 201 1e-51
DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA polyme... 54 3e-07
BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (D... 54 3e-07
AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed R... 54 3e-07
AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein. 54 3e-07
AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subu... 54 3e-07
Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA... 53 6e-07
AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subu... 53 6e-07
CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein. 46 1e-04
BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase ... 46 1e-04
AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase ... 46 1e-04
AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associate... 46 1e-04
AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain cont... 46 1e-04
X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation ... 41 0.004
X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation ... 41 0.004
M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation ... 41 0.004
CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein. 41 0.004
BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongatio... 41 0.004
BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongatio... 41 0.004
D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation ... 40 0.008
CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein. 40 0.008
BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongatio... 40 0.008
BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongatio... 40 0.008
AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongatio... 40 0.008
AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongatio... 40 0.008
AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongatio... 40 0.008
AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongatio... 40 0.008
AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongatio... 40 0.008
AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongatio... 40 0.008
X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation ... 39 0.011
AL355490-18|CAI40789.1| 307|Homo sapiens zinc finger, DHHC-type... 30 6.7
>Z23102-1|CAA80649.1| 125|Homo sapiens RNA Polymerase II subunit
14.5 kD protein.
Length = 125
Score = 201 bits (491), Expect = 1e-51
Identities = 85/117 (72%), Positives = 99/117 (84%), Gaps = 2/117 (1%)
Frame = +1
Query: 166 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI 345
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI HEVDELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 346 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 510
DV DPTLPRT+DH C KC H+EAVFFQ + RAE+ MRLYYVCT+ C HRWTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC067794-1|AAH67794.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 201 bits (491), Expect = 1e-51
Identities = 85/117 (72%), Positives = 99/117 (84%), Gaps = 2/117 (1%)
Frame = +1
Query: 166 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI 345
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI HEVDELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 346 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 510
DV DPTLPRT+DH C KC H+EAVFFQ + RAE+ MRLYYVCT+ C HRWTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>BC017112-1|AAH17112.1| 125|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide I, 14.5kDa protein.
Length = 125
Score = 201 bits (491), Expect = 1e-51
Identities = 85/117 (72%), Positives = 99/117 (84%), Gaps = 2/117 (1%)
Frame = +1
Query: 166 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI 345
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI HEVDELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 346 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 510
DV DPTLPRT+DH C KC H+EAVFFQ + RAE+ MRLYYVCT+ C HRWTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>AD001527-2|AAB51181.1| 125|Homo sapiens HUMAN DNA-DIRECTED RNA
POLYMERASE II 14.5 KD SUBUNIT protein.
Length = 125
Score = 201 bits (491), Expect = 1e-51
Identities = 85/117 (72%), Positives = 99/117 (84%), Gaps = 2/117 (1%)
Frame = +1
Query: 166 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI 345
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI HEVDELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 346 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 510
DV DPTLPRT+DH C KC H+EAVFFQ + RAE+ MRLYYVCT+ C HRWTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>DQ431198-2|ABD95903.1| 108|Homo sapiens DNA-directed RNA
polymerases III 12.5 kDa polypeptide protein.
Length = 108
Score = 54.4 bits (125), Expect = 3e-07
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + +AC C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>BC011932-1|AAH11932.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 54.4 bits (125), Expect = 3e-07
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + +AC C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF126531-1|AAD31424.1| 108|Homo sapiens putative DNA-directed RNA
polymerase III C11 subunit protein.
Length = 108
Score = 54.4 bits (125), Expect = 3e-07
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + +AC C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF060223-1|AAG43123.1| 108|Homo sapiens My010 protein protein.
Length = 108
Score = 54.4 bits (125), Expect = 3e-07
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + +AC C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AF051316-1|AAF18268.1| 108|Homo sapiens RNA polymerase III subunit
protein.
Length = 108
Score = 54.4 bits (125), Expect = 3e-07
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + +AC C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFACNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>Z69719-2|CAI95605.1| 108|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide K, 12.3 kDa protein.
Length = 108
Score = 53.2 bits (122), Expect = 6e-07
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + ++C C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFSCNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>AE006462-2|AAK61210.1| 108|Homo sapiens RNA polymerase III subunit
CII protein.
Length = 108
Score = 53.2 bits (122), Expect = 6e-07
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 187 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 366
FC C N L E + + ++C C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFSCNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 367 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 510
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>CR457109-1|CAG33390.1| 126|Homo sapiens ZNRD1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>BX088647-3|CAI95579.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>BC050608-1|AAH50608.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>BC010898-1|AAH10898.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AL845439-2|CAI18538.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AL671859-2|CAI17577.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AL669914-2|CAI18176.1| 126|Homo sapiens zinc ribbon domain
containing 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AF230338-1|AAG50160.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AF230337-1|AAG50159.1| 126|Homo sapiens nuclear RNA polymerase I
small specific subunit Rpa12 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AF024617-1|AAF40469.1| 126|Homo sapiens transcription-associated
zinc ribbon protein protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>AB202082-1|BAE78600.1| 126|Homo sapiens zinc ribbon domain
containing, 1 protein.
Length = 126
Score = 46.0 bits (104), Expect = 1e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 181 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 357
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 358 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 510
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>X62585-1|CAA44470.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>X57198-1|CAA40484.1| 280|Homo sapiens transcription elongation
factor protein.
Length = 280
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277
>M81601-1|AAA61138.1| 301|Homo sapiens transcription elongation
factor SII protein.
Length = 301
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>CR542221-1|CAG47017.1| 301|Homo sapiens TCEA1 protein.
Length = 301
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>BT019995-1|AAV38798.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>BC072460-1|AAH72460.1| 301|Homo sapiens transcription elongation
factor A (SII), 1 protein.
Length = 301
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>D50495-1|BAA09089.1| 299|Homo sapiens transcription elongation
factor S-II, hS-II-T1 protein.
Length = 299
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>CR456940-1|CAG33221.1| 299|Homo sapiens TCEA2 protein.
Length = 299
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>BC041613-1|AAH41613.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>BC018896-1|AAH18896.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>AL590548-5|CAD11901.1| 272|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 272
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 269
>AL590548-4|CAD11900.1| 270|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 270
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 234 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 269
>AL590548-1|CAI13198.1| 299|Homo sapiens transcription elongation
factor A (SII), 2 protein.
Length = 299
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>AL357134-3|CAI22178.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>AL109936-2|CAI19025.1| 348|Homo sapiens transcription elongation
factor A (SII), 3 protein.
Length = 348
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>AJ223473-1|CAA11393.1| 320|Homo sapiens transcription elongation
factor TFIIS.h protein.
Length = 320
Score = 39.5 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 282 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 317
>X73534-1|CAA51940.1| 301|Homo sapiens transcription elongation
factor protein.
Length = 301
Score = 39.1 bits (87), Expect = 0.011
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 397 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 504
C KC + + Q QTR A+E + + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRW 298
>AL355490-18|CAI40789.1| 307|Homo sapiens zinc finger, DHHC-type
containing 16 protein.
Length = 307
Score = 29.9 bits (64), Expect = 6.7
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 214 YPREDKNNKVLLYACRNCDY-KQLADSNCVYVNKIMHEVDELTHINPDVVS 363
YP + +N+ + C+ C Y K +C N+ + ++D HI P +S
Sbjct: 143 YPPQGRNDIATVSICKKCIYPKPARTHHCSICNRCVLKMDHHCHILPPALS 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,721,971
Number of Sequences: 237096
Number of extensions: 1459970
Number of successful extensions: 6659
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 6531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6653
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5929224630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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