Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26e24
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces pom... 105 8e-24
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 41 1e-04
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 31 0.12
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 29 0.82
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 1.9
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc... 26 5.8
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 25 7.6
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe... 25 7.6
>SPCC576.07 |ret3||coatomer zeta subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 105 bits (251), Expect = 8e-24
Identities = 54/146 (36%), Positives = 82/146 (56%), Gaps = 8/146 (5%)
Frame = +1
Query: 154 TLYIVKGMCILDYEGNRILAKYY--------DKDVLPTTKEQKAFEKNLFNKTHRANAEI 309
TLY V ILD G RI KYY + V + KE+K FEK LF KT + +I
Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKTQNDI 63
Query: 310 IMLDGLTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLD 489
+ DG V + +D+ FY++G ENE++L L ++ +++ LL + ++R L+EN D
Sbjct: 64 LTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYD 123
Query: 490 AVMLAFDEICDGGVILDADPTSIVSR 567
+++ DE D GVIL+ +P I +R
Sbjct: 124 QLVIVVDETIDDGVILETEPALIAAR 149
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 41.1 bits (92), Expect = 1e-04
Identities = 26/138 (18%), Positives = 63/138 (45%)
Frame = +1
Query: 163 IVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTCVYK 342
++ G+ I + +G+ ++ K + D+ + E F + T + I+ + T +Y
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTE--IFRVAILTNTDYRHP-IVSIGSSTYIYT 57
Query: 343 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICD 522
+ DL+ + + N +I+ L +L + ++ + E V +N+ + DE+ D
Sbjct: 58 KHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTV-KDNVSFIFELLDEMID 116
Query: 523 GGVILDADPTSIVSRAAL 576
G+I +P ++ ++
Sbjct: 117 YGIIQTTEPDALARSVSI 134
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 31.5 bits (68), Expect = 0.12
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Frame = +1
Query: 163 IVKGMCILDYEGNRILAKYYDK-DVLPTTKEQKAFEKNLFNKTHRANAEIIMLDGLTCVY 339
+++ + I + G L+KYY D + + + + + + A + + VY
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVY 60
Query: 340 KSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEIC 519
+ L+F S +N+L + +++ E + N+ L+ N V DEI
Sbjct: 61 RRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFF-GNVCELDLIFNFYKVSAILDEII 119
Query: 520 DGGVILDADPTSIVSR 567
GG I +++ S++ R
Sbjct: 120 LGGEIGESNKKSVLER 135
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 0.82
Identities = 19/81 (23%), Positives = 36/81 (44%)
Frame = +1
Query: 322 GLTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 501
G VY+ LFF +NELI+ V++ E + N+ L+ N +
Sbjct: 55 GEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYF-GNVCELDLIFNFEKAYY 113
Query: 502 AFDEICDGGVILDADPTSIVS 564
+E+ G + ++ T+++S
Sbjct: 114 VMEELLLAGELQESSKTNVLS 134
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 663 FNKDHLSCSLADCNTWGHCLLSQG-HVLGAQRC 568
F D+LS S + W C LSQ HV+ + RC
Sbjct: 789 FYGDYLSASKPNGTLWNTCGLSQNDHVIFSMRC 821
>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 572
Score = 25.8 bits (54), Expect = 5.8
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 130 MEGSLFEPTLYI-VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRAN 300
M GS P Y V C ++E +L++ Y+K++ P+T E K EK F + N
Sbjct: 325 MGGSYHFPNFYKKVDEYCGTEWE--TMLSRLYNKELTPSTDENK-LEKLCFKASWALN 379
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.6
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +1
Query: 253 QKAFEKNLFNKTHRANAEIIMLDGLTCVYKS-------------NVDLFFYVMGSSHENE 393
Q F N+ K+H+ ++ L L V+K+ N +L F G +
Sbjct: 201 QDVFFTNMSMKSHKLGTSLLALHALNHVFKTRDRVLKNSARISQNPELEFRDQGYTRPKV 260
Query: 394 LILQSVLNALYESVSLLL 447
LIL N+ +E ++LL+
Sbjct: 261 LILLPTRNSAFEFINLLI 278
>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 455 TWSGGSSWRTWMLLCLPSMRS 517
+WS G + W+ + LPSM S
Sbjct: 437 SWSNGIDYAKWISVALPSMLS 457
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,954
Number of Sequences: 5004
Number of extensions: 60463
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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