Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e24
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   192   3e-49
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    43   2e-04
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    33   0.14 
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, smal...    28   7.0  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    27   9.3  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  192 bits (467), Expect = 3e-49
 Identities = 84/165 (50%), Positives = 129/165 (78%), Gaps = 2/165 (1%)
 Frame = +1

Query: 154 TLYIVKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 330
           +LY +KG+ ILD +GNR+LAKYYD+    T KEQKAFEK+LF+KT R  +A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 331 CVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFD 510
           C+Y+SNVDL+FYV+GS+ ENEL L + L  LY++VS++LR+N+E++ L++++D +ML  D
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIID 129

Query: 511 EICDGGVILDADPTSIVSRAALRTEDVPLGEQTVAP-GIAISKGA 642
           EICD G+I++ D  ++V R AL++++V   +Q+V+  G +  K A
Sbjct: 130 EICDEGIIMETDAQAVVQRTALKSDEVSFSDQSVSQIGFSFMKSA 174


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 30/124 (24%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = +1

Query: 166 VKGMCILDYEGNRILAKYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTCVYK 342
           + G+ ILD +GN ++++ Y  DV  +  E+  F   L  K    +A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 343 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLR--RNMERRVLMENLDAVMLAFDEI 516
             ++++   +   + N ++   VL+ALY+ V +     + +E   + +N   +   FDE+
Sbjct: 61  KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEM 117

Query: 517 CDGG 528
            D G
Sbjct: 118 LDFG 121


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +1

Query: 367 VMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLAFDEICDGGVILDAD 546
           ++    E E I    +  LY  ++  L        ++   +A++  F+E      + +  
Sbjct: 384 ILSMKKEIEKIKDPTVKELYAKINSHLTILKSSLQVINKFEAILKVFEE----SSLHEIA 439

Query: 547 PTSIVSRAALRTEDVPLGEQTVAPGIAISKGAT*VV--LIEMNI 672
           PT    R +L+TE+  +GE  + P   ++K A   V  LIE  I
Sbjct: 440 PTMFQLRTSLKTEEDKVGENDIMPSAVVAKAARIAVDNLIEKKI 483


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 545 SASNITPPSQISSKASITASKFSMRTLRSMFLLSSKLTDS 426
           S S IT P  +  +  +TAS  S +  +S+ ++ SKLT S
Sbjct: 517 SLSIITSPKALIGEKCLTASNKSSKIDKSLGMIDSKLTKS 556


>AF016440-4|AAB65902.1|  157|Caenorhabditis elegans Adaptin, small
           chain (clathrinassociated complex) protein 1 protein.
          Length = 157

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/95 (23%), Positives = 38/95 (40%)
 Frame = +1

Query: 325 LTCVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVMLA 504
           L  VYK    L+F      ++NELI   V++   E +        E  ++  N +     
Sbjct: 55  LKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIF-NFEKAYFI 113

Query: 505 FDEICDGGVILDADPTSIVSRAALRTEDVPLGEQT 609
            DE    G I +     ++   A+  +D+   E+T
Sbjct: 114 LDEFLLAGEIQETSKKQVLK--AIAAQDLIQEEET 146


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 416 MHSTSLLVCC*EGTW-SGGSSWRTWMLLCLPSMRSATAV 529
           ++S S+LV     TW +GGS W  W LLC+  +  AT +
Sbjct: 129 LYSFSVLVIV--ATWLTGGSKWTPW-LLCIVFIVRATQI 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,616
Number of Sequences: 27780
Number of extensions: 351355
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)