Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e23
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   2.0  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    26   4.5  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   6.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   6.0  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.0  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   6.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   7.9  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
 Frame = +3

Query: 36  RFHSANANRIKMFPLRRVVGNXILXQWRSQATAAVG--AKTQMKAYSTE-VTPRPLTMLT 206
           R +  N NR  +  L   V      QWRSQ    +   AKT  + + T+ +  RPL +  
Sbjct: 35  RKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPLLIPV 94

Query: 207 EDELAMRETIRKLATEQISPL 269
              L +   +R  +  ++  L
Sbjct: 95  LANLNVPHEVRVSSLARVQTL 115


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 102 ILXQWRSQATAAVGAKTQMKAYSTEVTPRP-LTMLTEDELAMRETIRKLATEQISPL 269
           ++ +W+      +    + +A    +T +P +T+  E+E  ++ET+ ++ +E+I P+
Sbjct: 671 LISEWQKYRDEVIARVAEERA----ITGQPAITVPAEEEEIIQETVEEVISEEIEPV 723


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 116 EVPGNGCRWSKDSDESIQHRSYPTTFD 196
           +V GN  +  K SDE ++ R+ P TF+
Sbjct: 510 DVLGNAHKKFKGSDEVVESRAGPVTFE 536


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 455  SQHLSQLSVHEARYRRTKKEIFNETLH 535
            S  L  +S+H  + R ++K+IFN  LH
Sbjct: 1265 SSILQFVSLHRQKIRISRKKIFNYALH 1291


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 385 KLQPEPLYSTGVSMPINP 332
           +LQPEPL+  GVS  + P
Sbjct: 702 ELQPEPLHYVGVSYGLTP 719


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 300 RCGVHLPFSSQADLFVRSLVSVLFPSWRVHLLSAWS 193
           + GV   + +  + +V  +  VLF  W + L+S W+
Sbjct: 268 KTGVVAVWCTNKEKYVNFVKKVLFKKWNLTLVSTWT 303


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 497 RRTKKEIFNETLHGICWQFLSHR 565
           +++ K++FN  L G C   LSHR
Sbjct: 870 KKSIKDVFNVLLEGRCSLILSHR 892


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 168 STEVTPRPLTMLTEDELAMRETIRKLATEQISPLVKKMEDE---HRIDD 305
           ST   PRP   LTE +   R       T  IS ++K + ++    RID+
Sbjct: 559 STGPRPRPTFQLTEIDSPNRRRASDCITPSISKILKMVSEDAKSQRIDE 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,458
Number of Sequences: 5004
Number of extensions: 45722
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)