Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e23
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...    63   1e-10
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310...    54   1e-07
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    47   1e-05
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768...    31   0.86 

>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
 Frame = +3

Query: 225 RETIRKLATEQISPLVKKMEDEHRI--DDGIRQMLFDNGLMGIETPVEYSGSGCNFLTMM 398
           +E++ K A E I+P    ++  +    D  + +++ D  L G+  P EY G G  ++   
Sbjct: 39  KESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHC 98

Query: 399 LVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCT-EYAGSFCLTEPS 572
           + +EE+SR   +V      H+ L  +  ++ G+  QK KYL KL + E+ G+  ++EP+
Sbjct: 99  IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKLKYLPKLISGEHVGALAMSEPN 157


>01_01_0413 -
           3107668-3107796,3107879-3107971,3108082-3108253,
           3108341-3108417,3108514-3108673,3108766-3108875,
           3109384-3109443,3109545-3109618,3109748-3109871,
           3110795-3110872,3111169-3111275,3112572-3112673,
           3112800-3112815
          Length = 433

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
 Frame = +3

Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
           +LT +E ++R+ +R +  ++I+P++    ++          L   G+ G  T   Y   G
Sbjct: 49  LLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAG-GTIKGYGCPG 107

Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLCTEYA-GSF 554
            +     + + E++RVD + + ++ +H++L        G+E QK+KYL  L    A G +
Sbjct: 108 LSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQLTAVGCW 167

Query: 555 CLTEPS 572
            LTEP+
Sbjct: 168 ALTEPN 173


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
 Frame = +3

Query: 198 MLTEDELAMRETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFDNGLMGIETPVEYSGSG 377
           +LTE+E  ++  +R+    +++P++ K  ++      +   +   G+ G  T   Y   G
Sbjct: 60  LLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAG-GTIKGYGCPG 118

Query: 378 CNFLTMMLVVEELSRVDPAVAAYVDIHNTLVNSLFMKLGTEEQKKKYLTKLC-TEYAGSF 554
            +     +   E++RVD ++A++  + + L      +LG+E QK+KYL  L   +    +
Sbjct: 119 LSGPACAMCFLEIARVDASIASFCLVQSCLAMVSIAQLGSEAQKEKYLRPLSKMQKVCVY 178

Query: 555 CLTEPS 572
            L+EP+
Sbjct: 179 ALSEPN 184


>10_04_0022 +
           7687383-7687670,7688479-7688556,7689456-7689535,
           7689876-7690095,7690444-7690677
          Length = 299

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
 Frame = +3

Query: 201 LTEDELAMR--ETIRKLATEQISPLVKKMEDEHRIDDGIRQMLFD 329
           L E+ELA R  E+IRK   ++++    K E + R+++GI+Q LFD
Sbjct: 158 LLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQ-LFD 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,805
Number of Sequences: 37544
Number of extensions: 327786
Number of successful extensions: 975
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)