Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e19
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    27   2.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   2.6  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   6.0  

>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 47  YPFIVNDEYHDVKLRIPSYFGTISPVEAASSIL--DSVRR-NYPEASV 181
           YP       HD  L IPS  GTI   + ++ I+  DS+R  + PE S+
Sbjct: 295 YPDDAESFMHDAYLLIPSEDGTIQITDPSTKIIIDDSIRHSDDPETSL 342


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 420 KFMSFLIYIFYF*FHSKNIHLRDYLIYFSKTIERIKLKQFQHLFLFILVLSNNMFINSLL 599
           +F+SF++YI  F     ++   +Y   FS+         + H+ L ++V  ++  IN+L 
Sbjct: 150 RFISFMLYIIGFVLFVASLKKGNYKFQFSQFC-------WTHMTLLLVVGQSHFMINNLF 202

Query: 600 RKKYIFF 620
              + FF
Sbjct: 203 EGLFWFF 209


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +1

Query: 124 RSSIIDPGQRQEELPGSISSKTFVMSWSFVTYSTAPSNSTNKGLTRHRC*FCLMLLI--D 297
           +S+++ P      +PG  +S     + +FV  + +P ++T     RH     L  +I  D
Sbjct: 221 KSTMLMPSDSDNSVPGIQNSNNLENTGAFVENANSPQSNTPLSTFRHSSPLSLSPVITSD 280

Query: 298 N-FCNSLEF 321
           N   NSL F
Sbjct: 281 NDVANSLFF 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,943
Number of Sequences: 5004
Number of extensions: 50007
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)