Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e19
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81581-3|CAB04665.1|  255|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U57624-1|AAB02238.1|  255|Caenorhabditis elegans SPE-12 protein.       30   1.4  
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    30   1.9  
Z66515-3|CAA91352.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical pr...    29   4.3  
S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.       29   4.3  
S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.       29   4.3  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    28   5.7  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    28   5.7  
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    27   9.9  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    27   9.9  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z81581-3|CAB04665.1|  255|Caenorhabditis elegans Hypothetical
           protein T02E1.1 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 438 IYIFYF*FHSKNIHLRDYLIYFSKTIERIKLKQFQH 545
           IY  +  F  +N  + DYLIY+  T E +K  ++ H
Sbjct: 128 IYSMFDYFAFENTGIADYLIYYKPTAEELKAVRYVH 163


>U57624-1|AAB02238.1|  255|Caenorhabditis elegans SPE-12 protein.
          Length = 255

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 438 IYIFYF*FHSKNIHLRDYLIYFSKTIERIKLKQFQH 545
           IY  +  F  +N  + DYLIY+  T E +K  ++ H
Sbjct: 128 IYSMFDYFAFENTGIADYLIYYKPTAEELKAVRYVH 163


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 487 IILFISVRLLSELNSNNFNI-FFYLFWS*VII 579
           I +FISVR LS+L S  F+    Y+FW  +++
Sbjct: 197 IPIFISVRKLSQLTSAQFHSPHIYIFWQSIVV 228


>Z66515-3|CAA91352.1|  322|Caenorhabditis elegans Hypothetical
           protein R53.3b protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 PGSISSKTFVMSWSFVTYSTAPSNSTNKGLTRHRC*FC 279
           P   S  +F+ + S    S++PS+S+  G  R+ C FC
Sbjct: 191 PAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC 228


>Z66515-2|CAA91353.1|  543|Caenorhabditis elegans Hypothetical
           protein R53.3a protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 PGSISSKTFVMSWSFVTYSTAPSNSTNKGLTRHRC*FC 279
           P   S  +F+ + S    S++PS+S+  G  R+ C FC
Sbjct: 412 PAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC 449


>S66936-1|AAB28820.1|  360|Caenorhabditis elegans Egl-43 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 PGSISSKTFVMSWSFVTYSTAPSNSTNKGLTRHRC*FC 279
           P   S  +F+ + S    S++PS+S+  G  R+ C FC
Sbjct: 191 PAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC 228


>S66757-1|AAB28819.1|  581|Caenorhabditis elegans Egl-43 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 PGSISSKTFVMSWSFVTYSTAPSNSTNKGLTRHRC*FC 279
           P   S  +F+ + S    S++PS+S+  G  R+ C FC
Sbjct: 412 PAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFC 449


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 578  IIT*DQNK*KKMLKLFEFNSLNSLTEINKI 489
            +IT D ++ K ++KLF  +S NSL  IN +
Sbjct: 1095 LITIDSSELKPLVKLFAIDSTNSLISINDL 1124


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 578  IIT*DQNK*KKMLKLFEFNSLNSLTEINKI 489
            +IT D ++ K ++KLF  +S NSL  IN +
Sbjct: 1095 LITIDSSELKPLVKLFAIDSTNSLISINDL 1124


>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  PFIVNDEYHDVKLRIPSYFGTISPVE 127
           PF+++ ++H + LR+P+  G +  +E
Sbjct: 534 PFLISLDFHGLHLRLPNLSGVLQQIE 559


>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical
           protein F22G12.5 protein.
          Length = 2396

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 50  PFIVNDEYHDVKLRIPSYFGTISPVE 127
           PF+++ ++H + LR+P+  G +  +E
Sbjct: 534 PFLISLDFHGLHLRLPNLSGVLQQIE 559


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 489 YLIYFSKTIERIKLKQFQHLFLFILVLSNNMFINSLLRKKYIFFYVKKEICF 644
           +L+ FS  I       F + FL+    S N +I++ +RK  +FF +K  ICF
Sbjct: 119 HLLLFSLAIMSFLKYHFPYDFLY----SQN-YISNYVRKLNVFFVLKDFICF 165


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 50  PFIVNDEYHDVKLRIPSYFGTISPVEAASSILDSVRRNY 166
           P I+N    +VK+  P Y G +S  EA    L  +  NY
Sbjct: 158 PDIINSNITEVKINSPDYKGIMSQEEAKEDFLKRI-ENY 195


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 50  PFIVNDEYHDVKLRIPSYFGTISPVEAASSILDSVRRNY 166
           P I+N    +VK+  P Y G +S  EA    L  +  NY
Sbjct: 164 PDIINSNITEVKINSPDYKGIMSQEEAKEDFLKRI-ENY 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,809
Number of Sequences: 27780
Number of extensions: 269973
Number of successful extensions: 613
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)