Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26e14
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.30
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.69
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 28 0.69
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 27 1.6
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 27 2.1
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.1
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 3.7
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 26 3.7
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 25 6.5
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 25 6.5
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 8.5
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 29.5 bits (63), Expect = 0.30
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 406 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 290
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.69
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 266 DYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 370
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.3 bits (60), Expect = 0.69
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Frame = -1
Query: 181 VIDHNVTRMVIVDHVNVSRIIIIDDVHLSVGHSQQSEDENHEEFHF------YMITSYHR 20
++DH V+ VI + NV++ + + S+ ++ +EN E++H+ Y+ +H
Sbjct: 20 IVDH-VSEKVITNGKNVNKKVNAEVDGKSMVEKVKTHEENAEDYHYGGYHPVYIGEEFHH 78
Query: 19 RKY 11
R+Y
Sbjct: 79 RRY 81
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = -1
Query: 226 FVAVSYSRLGKEWIGVIDHNVTRMVIVDHVNVSRIIIIDDVHLSVGHSQQSEDEN 62
F ++S S L +W+G + V ++ + II ID++ G + E E+
Sbjct: 190 FFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEGESES 244
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 260 PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPT 358
PK PN N +P NG + PP Y KPT
Sbjct: 46 PKASKPNSN--QPYPNGPVCIYPPNIYLYAKPT 76
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 292 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 399
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 182 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 316
P P A + + P +++ PY+ N D+N NGN P+ +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -1
Query: 148 VDHVNVSRIIIIDDVHL 98
+ +VN+ R++IID+VHL
Sbjct: 642 LSYVNLVRLVIIDEVHL 658
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 263 KDYNPNGNGYEPIDNGAYYVDPPQGRP 343
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -2
Query: 504 FFFKHYNMFIYLFR*HKFI*NFEI 433
FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 501 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 406
FF YN FI+ F+ FI ++ Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,214
Number of Sequences: 5004
Number of extensions: 43673
Number of successful extensions: 136
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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