Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e13
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    63   4e-11
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    58   2e-09
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    30   0.36 
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.1  
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po...    25   7.7  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   7.7  

>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 5/136 (3%)
 Frame = +3

Query: 285 VFGTGAIAKVL-VPFLKE--KGFSVEAIWG--ITLQEAEIAAKELKIPFFTNKIDDVLLK 449
           V GTG  A +   PFLK     F V A W    T  E++  A    +  +T K+D++L  
Sbjct: 8   VLGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTESKARAAFPNVKVYT-KLDELLAD 66

Query: 450 KNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMVRAAQYYPTLISIVN 629
            N+ LV I   PN+H ++  +AL  GKHV+C+KP      EA ++   A+    L+  V 
Sbjct: 67  SNIELVVISLPPNVHYEVVSQALNAGKHVLCEKPFTPTYGEAKELFDLAK-SKNLMLTVY 125

Query: 630 HSLRFLPAFTHMRKCI 677
            + RF   F   ++CI
Sbjct: 126 QNRRFDGDFLTAKECI 141


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 5/118 (4%)
 Frame = +3

Query: 285 VFGTGAIAKVL-VPFLKE--KGFSVEAIWG--ITLQEAEIAAKELKIPFFTNKIDDVLLK 449
           V GTG  A V   PFL+     F + A      T+ +++  +    I  +TN +D++L  
Sbjct: 8   VLGTGVSAFVFHFPFLEALPSKFEIYACLERRATVTQSKARSAYPNILVYTN-LDELLAD 66

Query: 450 KNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMVRAAQYYPTLISI 623
            N+ LV +   PN+H++I  KAL  GKHVVC+KP      EA ++   A+    L++I
Sbjct: 67  VNIELVVVSLPPNVHSEIVKKALNAGKHVVCEKPFTPTYEEAKELYELAESKSLLLAI 124


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +3

Query: 432 DDVLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKPAGLCQAEALKMVRAAQ 599
           ++++    V +V+I      H ++   AL   K V+C+KP  +   EAL++V  A+
Sbjct: 74  EELVKDDKVDIVYISSTHPQHYEVVKLALLNDKAVLCEKPLTINYPEALELVELAR 129


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 395 CGYLCFLQSYTPYCF-NRKSFLFQERHQNFSNRSCSKN 285
           C  L F   Y  + F +R+SFLF+  H++  N  CS++
Sbjct: 177 CLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCSEH 214


>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 288 FGTGAIAKVLVPFLKEKGFSVEAI----WGITLQEAEIAAKELKIPFFTNKIDDVLLKK 452
           +G G+ A +L  FLKE    +       W I +     +  ++ +   TN+ D +L++K
Sbjct: 99  YGQGSGAALLSQFLKEHTRIIHNPPYEGWNIIMTTGNTSCLDIALRMLTNRGDSILVEK 157


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 518 KCFDRYLSMKIWGTNYEN*TH 456
           +CF+ +L+ K W   +EN  H
Sbjct: 280 QCFESHLNYKAWHLEFENEAH 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,019
Number of Sequences: 5004
Number of extensions: 59122
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)