Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e13
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299...    31   0.64 
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668...    31   1.1  
08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    29   3.4  
01_06_0269 - 28043862-28043966,28044638-28044931                       28   7.9  

>05_01_0383 +
           2990812-2990855,2991364-2991463,2991554-2991622,
           2991724-2991960,2992045-2992228,2992307-2992442,
           2992529-2992691,2992958-2993108,2993154-2993278,
           2993349-2993504,2993792-2993860,2993951-2994019,
           2994127-2994264,2994626-2994773,2994856-2994866,
           2995212-2995352,2995441-2995569,2995860-2995899,
           2996020-2996348,2996902-2996919
          Length = 818

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 378 EAEIAAKELKIPFFTNKIDD--VLLKKNVSLVFIVCAPNLHAQISVKALGIGKHVVCDKP 551
           E E  A+  ++PF  + +D   V +    S +F+    N   Q   KAL + KH+  ++ 
Sbjct: 141 EGEHVARVTEVPFSRSSLDHKAVFVVDTESKIFLFSGCNSSMQTRAKALDVVKHLKENRH 200

Query: 552 AGLCQ 566
            G C+
Sbjct: 201 CGRCE 205


>04_03_0961 +
           21263735-21263773,21264157-21264279,21266774-21266847,
           21266939-21267095,21267554-21267694,21267739-21267823,
           21268810-21268903,21269041-21269239,21269515-21269549,
           21270076-21270631,21270722-21270882,21271704-21271718,
           21273078-21273330,21273439-21273562,21273688-21273788,
           21274870-21274938,21275060-21275191,21275270-21275404,
           21275489-21275551,21275636-21275881,21276007-21276285
          Length = 1026

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 407 NSFLHKQN*RRPSQE--ECEFSFHSLCPKSSCSDICQSTWYRKTC 535
           N FLH+++ R+  ++   CE  ++ L P S+C D C +      C
Sbjct: 73  NDFLHRRHKRQKEEDIAVCECQYNLLDPDSACGDRCLNVLTSTEC 117


>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +3

Query: 441 LLKKNVSLVFIVCAPNL-HAQISVKALGIGK--HVVCDKPAGLCQAEALKMVRAAQYYPT 611
           LL   +    +V +PN+ H QI +  +   K  H++ +KP      +  K+V AA+    
Sbjct: 125 LLDSGLCDAVVVSSPNMTHYQILMDIISHAKPHHILVEKPLCTTVQDCQKVVEAAKQRSD 184

Query: 612 LISIVNHSLRFLP 650
           ++  V    R++P
Sbjct: 185 ILVQVGLEYRYMP 197


>01_06_0269 - 28043862-28043966,28044638-28044931
          Length = 132

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 468 FIVCAPNLHAQISVKALGIGKHVVCDKPAGLC--QAEALKMVRAAQYYP 608
           +IVC   +   + + A+  G      +    C  Q + ++MVR+  YYP
Sbjct: 64  YIVCTLGVAEPVDLPAVRAGIEATLARHPRFCSIQGDCMRMVRSVHYYP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,114,219
Number of Sequences: 37544
Number of extensions: 316124
Number of successful extensions: 680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)