Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e13
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin conju...    32   0.33 
AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical ...    29   4.1  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    23   5.3  
AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical...    28   7.1  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U40411-1|AAC47063.2|  679|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein17 protein.
          Length = 679

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 300 AIAKVLVPFLKEKGFSVEAIWGITLQEAEIAAKE 401
           +IAK L+P  KE   S++A WG TL+E      E
Sbjct: 277 SIAKELIPRFKENILSIQARWGGTLEETNFRMAE 310


>AF067220-1|AAK84500.1| 1014|Caenorhabditis elegans Hypothetical
           protein C33E10.6 protein.
          Length = 1014

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 409 ILSSFAAISASCKVIPHIASTENPFSFKKGTRTLAIAPVPKTPIPGNIVLTLFS 248
           IL+    +  + + + H    EN  +FK     +A++ +PK     NI + +FS
Sbjct: 77  ILAHLFPVVQNAERVSHYKKYENELNFKNIGFPVAVSDIPKVEKLNNIAINVFS 130


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 23.4 bits (48), Expect(2) = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 491  SCSDICQSTWYRKTCC 538
            SC DI + T +  TCC
Sbjct: 1489 SCQDIDECTEHNSTCC 1504



 Score = 23.0 bits (47), Expect(2) = 5.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 434  RRPSQEECEFSFHSLCPKSSCSDI 505
            RR     CE  F    PK SC D+
Sbjct: 1428 RRTGVCRCEPGFEGAPPKKSCVDV 1451


>AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical
           protein Y25C1A.4 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 422 CEERNFKFFCGYLCFLQSYTPYCFNRKSFLFQ 327
           CE RN  +F  + CF  S   YC +    L++
Sbjct: 208 CEYRNSPYFSCFSCFQNSVLGYCSSTVEVLYE 239


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
            protein C44E4.1a protein.
          Length = 2712

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 584  HLQCFSL-AQSRWFITNNMFSYT-KCFDRYLSMKIWGTNYEN 465
            H +C  L  QS   +++NMF    +CF   LS+ + G+N EN
Sbjct: 1779 HEECAKLHEQSVNLLSDNMFGERLRCFVELLSLLLSGSNVEN 1820


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
            protein C44E4.1c protein.
          Length = 2710

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -2

Query: 584  HLQCFSL-AQSRWFITNNMFSYT-KCFDRYLSMKIWGTNYEN 465
            H +C  L  QS   +++NMF    +CF   LS+ + G+N EN
Sbjct: 1779 HEECAKLHEQSVNLLSDNMFGERLRCFVELLSLLLSGSNVEN 1820


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,724
Number of Sequences: 27780
Number of extensions: 330881
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)