Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e03
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78...    28   5.4  
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325...    27   9.4  

>06_01_0094 +
           779097-779155,779882-781019,781732-782115,782842-783060
          Length = 599

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 216 TVCRPPVLP*TIDLLCSLLPELIALLCA*KNVLPYINTLH 335
           T+C P V P    LL SLL ++IALL + +++L +  T H
Sbjct: 42  TLCEPHVWP---GLLESLLHQIIALLSSFQDLLAFSATCH 78


>06_02_0103 -
           11829343-11829699,11831560-11831826,11832239-11832559,
           11833783-11833844,11835413-11835446,11835539-11835619
          Length = 373

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/97 (20%), Positives = 36/97 (37%)
 Frame = +2

Query: 158 YRILVCSYRGEANMVIEKLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQYLTQ 337
           Y  L C    E N +IE+    +   + ++D +     A  D   + ++ R      + Q
Sbjct: 267 YIPLCCPMDSEVNNIIEEEGSFEVNKMMMHDPYDGTGKALLDLKMVALRVRAVFEPIIVQ 326

Query: 338 TLNIRNRFLIDQIARKLEYQMKRATLRQRLGLGQAPF 448
                +  + D +     + +    L  RL  GQ PF
Sbjct: 327 HFAASDEIMDDFVRAVERHLISSGALEARLS-GQHPF 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,578,026
Number of Sequences: 37544
Number of extensions: 321433
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)