Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e03
         (632 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112350-1|AAI12351.1|  955|Homo sapiens THRAP3 protein protein.       33   0.64 
BC112330-1|AAI12331.1|  955|Homo sapiens thyroid hormone recepto...    33   0.64 
AL591845-1|CAH71859.1|  955|Homo sapiens thyroid hormone recepto...    33   0.64 
AF117756-1|AAD22034.1|  955|Homo sapiens thyroid hormone recepto...    33   0.64 
Z98257-2|CAI20259.1|  280|Homo sapiens UBX domain containing 3 p...    30   5.9  
BC047428-1|AAH47428.1|  280|Homo sapiens UBX domain containing 3...    30   5.9  
AK058158-1|BAB71693.1|  280|Homo sapiens protein ( Homo sapiens ...    30   5.9  

>BC112350-1|AAI12351.1|  955|Homo sapiens THRAP3 protein protein.
          Length = 955

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 209 KLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQ 325
           K H   ++ +TL++RFT     GT++ A + KK P +H+
Sbjct: 639 KEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR 677


>BC112330-1|AAI12331.1|  955|Homo sapiens thyroid hormone receptor
           associated protein 3 protein.
          Length = 955

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 209 KLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQ 325
           K H   ++ +TL++RFT     GT++ A + KK P +H+
Sbjct: 639 KEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR 677


>AL591845-1|CAH71859.1|  955|Homo sapiens thyroid hormone receptor
           associated protein 3 protein.
          Length = 955

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 209 KLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQ 325
           K H   ++ +TL++RFT     GT++ A + KK P +H+
Sbjct: 639 KEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR 677


>AF117756-1|AAD22034.1|  955|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP150
           protein.
          Length = 955

 Score = 33.5 bits (73), Expect = 0.64
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 209 KLHGLQATSITLNDRFTLLSTAGTDRAAMRMKKRPTVHQ 325
           K H   ++ +TL++RFT     GT++ A + KK P +H+
Sbjct: 639 KEHHFGSSGMTLHERFTKYLKRGTEQEAAKNKKSPEIHR 677


>Z98257-2|CAI20259.1|  280|Homo sapiens UBX domain containing 3
           protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 295 AHEKTSYRTSIPYTNPEHKKPFLD*PDRSKAGVSDEAGDITSTAWTGSST 444
           AH   S   +IPY  P  +KP    P     G SDE  ++     TG+S+
Sbjct: 60  AHHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASS 109


>BC047428-1|AAH47428.1|  280|Homo sapiens UBX domain containing 3
           protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 295 AHEKTSYRTSIPYTNPEHKKPFLD*PDRSKAGVSDEAGDITSTAWTGSST 444
           AH   S   +IPY  P  +KP    P     G SDE  ++     TG+S+
Sbjct: 60  AHHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASS 109


>AK058158-1|BAB71693.1|  280|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25429 fis, clone TST05630. ).
          Length = 280

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 295 AHEKTSYRTSIPYTNPEHKKPFLD*PDRSKAGVSDEAGDITSTAWTGSST 444
           AH   S   +IPY  P  +KP    P     G SDE  ++     TG+S+
Sbjct: 60  AHHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASS 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,380,098
Number of Sequences: 237096
Number of extensions: 1760103
Number of successful extensions: 3160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3160
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)