Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26e03
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical pr...    29   2.8  
S57284-1|AAB25906.1|  437|Caenorhabditis elegans S-adenosylhomoc...    29   2.8  
M64306-1|AAA28062.1|  437|Caenorhabditis elegans S-adenosylhomoc...    29   2.8  
AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.      29   2.8  
AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical ...    29   2.8  
L23651-10|AAM22041.1|  821|Caenorhabditis elegans Kleisin (abnor...    27   8.4  

>Z93382-9|CAB07615.2|  462|Caenorhabditis elegans Hypothetical
           protein F45G2.6 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 224 ADRVIFQSPYLLHRGNYKLKFCTRIF 147
           AD  IF  P++ HR  YK+  C  +F
Sbjct: 283 ADTTIFSVPFMSHRFGYKMMACACLF 308


>S57284-1|AAB25906.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -2

Query: 535 SSLDASVAEVTGAV*PHQALEGVPIIELMEWCLTQSKPLT*CRPLHLILQLSSDLVNQET 356
           S+ D + A +     P  A +G    E  EWC+ Q+      +PL++IL    DL N   
Sbjct: 84  STQDHAAAAIAQTGVPVYAWKG-ETDEEYEWCIEQTIVFKDGQPLNMILDDGGDLTNLVH 142

Query: 355 VSYVQGLCKV 326
             Y Q L  +
Sbjct: 143 AKYPQYLAGI 152


>M64306-1|AAA28062.1|  437|Caenorhabditis elegans
           S-adenosylhomocysteine hydrolase protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -2

Query: 535 SSLDASVAEVTGAV*PHQALEGVPIIELMEWCLTQSKPLT*CRPLHLILQLSSDLVNQET 356
           S+ D + A +     P  A +G    E  EWC+ Q+      +PL++IL    DL N   
Sbjct: 84  STQDHAAAAIAQTGVPVYAWKG-ETDEEYEWCIEQTIVFKDGQPLNMILDDGGDLTNLVH 142

Query: 355 VSYVQGLCKV 326
             Y Q L  +
Sbjct: 143 AKYPQYLAGI 152


>AF348168-1|AAK37546.1|  462|Caenorhabditis elegans TRF-1 protein.
          Length = 462

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 224 ADRVIFQSPYLLHRGNYKLKFCTRIF 147
           AD  IF  P++ HR  YK+  C  +F
Sbjct: 283 ADTTIFSVPFMSHRFGYKMMACACLF 308


>AF043699-5|AAB97565.1|  437|Caenorhabditis elegans Hypothetical
           protein K02F2.2 protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/70 (30%), Positives = 31/70 (44%)
 Frame = -2

Query: 535 SSLDASVAEVTGAV*PHQALEGVPIIELMEWCLTQSKPLT*CRPLHLILQLSSDLVNQET 356
           S+ D + A +     P  A +G    E  EWC+ Q+      +PL++IL    DL N   
Sbjct: 84  STQDHAAAAIAQTGVPVYAWKG-ETDEEYEWCIEQTIVFKDGQPLNMILDDGGDLTNLVH 142

Query: 355 VSYVQGLCKV 326
             Y Q L  +
Sbjct: 143 AKYPQYLAGI 152


>L23651-10|AAM22041.1|  821|Caenorhabditis elegans Kleisin (abnormal
           closure) familyprotein 2 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -2

Query: 364 QETVSYVQGLCKVLMYGRTFFHAHSSAISSGSREQSKSIVQGNTG 230
           Q     +QG C V  YGR   H +   IS     ++K    GNTG
Sbjct: 66  QRACRIIQGSCAV--YGRKVDHVYELTISVVDLVENKGQDDGNTG 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,946
Number of Sequences: 27780
Number of extensions: 279427
Number of successful extensions: 598
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)