Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26d16
         (414 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   0.78 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   4.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.3  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              20   9.6  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              20   9.6  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 0.78
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = +3

Query: 201 HFFHSNR--ISWNSCNN-WN 251
           +FF S R  + W SCNN WN
Sbjct: 87  YFFMSMRSELPWGSCNNYWN 106


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 139 ILQAYEYIEASFTIADRIYGST 204
           +LQA EYIE     A+  Y ST
Sbjct: 6   LLQAAEYIERREREAEHGYAST 27


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 148 AYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFL 261
           A + +EA   + DR  G    I  G H   V+ G + L
Sbjct: 496 ALDMVEAITDLKDRSTGLHLQIRVGVHSGAVVAGIVGL 533


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 354 CSMIISLHFYLLMRKLIK 407
           CS+I   + Y+   KL+K
Sbjct: 104 CSVISDANIYIRFNKLVK 121


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 354 CSMIISLHFYLLMRKLIK 407
           CS+I   + Y+   KL+K
Sbjct: 104 CSVISDANIYIRFNKLVK 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,738
Number of Sequences: 438
Number of extensions: 1416
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)