Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26d14
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   1.2  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   4.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   8.4  

>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 95  HLIKTYDLPTSRVVLTVYFLGAILTV*RFFLIRHFDRETIPYILF 229
           H  K + LP S     +  L  +L++   FL++H+    +P++++
Sbjct: 447 HNYKDFSLPRSLPRPFLLALSILLSIISSFLVKHWRESKVPFLVY 491


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 71  PHLKNLNYHLIKTY 112
           PH   LNYHL K+Y
Sbjct: 249 PHQVGLNYHLAKSY 262


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 358  VHNTDQEENTSMNFYDYHFNK 296
            + + D+ E  S+NF+DY F++
Sbjct: 1432 IDDPDEIEAVSLNFHDYSFDQ 1452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,422,737
Number of Sequences: 5004
Number of extensions: 24119
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)