Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26d14
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.35 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   3.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   3.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   5.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   5.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   5.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   5.6  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.0 bits (52), Expect = 0.35
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 385 IINYSTLKCVHNTDQEENTSMNFYDYHFNKTCIYR 281
           II+  + K +HN +   N + N Y+Y+ N    Y+
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYK 115


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +2

Query: 71  PHLKNLNYHLIKTYDLPTSRVVLTVYFLGAILTV*RFFLIRHF--DRETIPYIL 226
           PH K L +HL K     T+  ++   F+   L      L+R F  + + IP  L
Sbjct: 355 PHQKKLRFHLAKERKASTTLGIIMSAFIVCWLPFFVLALVRPFLKNPDAIPAFL 408


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 216 RTFCLTSNTFRDLIDIVLNK 275
           +T  LT N  RD+ DI LN+
Sbjct: 174 QTLNLTENRLRDINDIGLNR 193


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 385 IINYSTLKCVHNTDQEENTSMNFYDY---HFNKTCIYRIILLSTMSI 254
           II+  + K +HN +  +    N Y+Y   ++NK   Y+  +++   I
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 310 YHFNKTCIYRIILLSTMSIKSRNVFE 233
           Y+F+ T     IL + MSIK RN F+
Sbjct: 317 YYFSTTI--NPILYNLMSIKYRNAFK 340


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 355 HNTDQEENTSMNFYDYHFNKTCIYRIILLSTMSI 254
           +NT    N   N+ + ++NK   Y I  +  + I
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 355 HNTDQEENTSMNFYDYHFNKTCIYRIILLSTMSI 254
           +NT    N   N+ + ++NK   Y I  +  + I
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 355 HNTDQEENTSMNFYDYHFNKTCIYRIILLSTMSI 254
           +NT    N   N+ + ++NK   Y I  +  + I
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 355 HNTDQEENTSMNFYDYHFNKTCIYRIILLSTMSI 254
           +NT    N   N+ + ++NK   Y I  +  + I
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,282
Number of Sequences: 438
Number of extensions: 1576
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)