Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt26d05
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 114 1e-26
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 108 6e-25
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 106 3e-24
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 103 3e-23
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 100 4e-22
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 58 2e-09
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 57 2e-09
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 32 0.090
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 29 0.48
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.5
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 25 7.8
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 25 7.8
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 114 bits (274), Expect = 1e-26
Identities = 69/198 (34%), Positives = 106/198 (53%), Gaps = 1/198 (0%)
Frame = +3
Query: 102 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTR 281
LYI+G++ S T W E +P+ EVI +V A + E+ A+ +AK A+KTW K +
Sbjct: 23 LYINGEWHKSAET-W-ETVDPSIEEVIAKVYLAGEKEIDYAVKSAKEAFKTWKKVPGSEK 80
Query: 282 QQLMFKFARLLRENQSKLAAKITEEQGKT-IADAEGDVLRGIQSVEHCCSITSLQLGDSI 458
+L+ K A L ++ LAA + GK +++A GDV I + +C G I
Sbjct: 81 GELLMKLAELTEKHADTLAAIEAMDSGKPLVSNARGDVDGTIALLRYCAGWADKIYGQVI 140
Query: 459 QNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLM 638
+ + ++ + P+GV G + +N+P+ + W PAL GN IIK +E P + L
Sbjct: 141 PTGPEKL-AYAKRTPIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLY 199
Query: 639 MMELLQEAGAPPGVVNII 692
L++EAG P GVVNII
Sbjct: 200 FATLVEEAGFPKGVVNII 217
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 108 bits (260), Expect = 6e-25
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 1/197 (0%)
Frame = +3
Query: 105 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 284
++ G+++ S E+ NPAT E+IG+V + + +E A+ AA A+KT+ T + R
Sbjct: 21 FVQGKWISSPNNKTFEVDNPATGEIIGKVADVSVEETKKAISAANEAFKTYKNFTHVQRS 80
Query: 285 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 464
QL+ ++A L+ EN+ L +T E GK ++ AE +V ++ + GD +
Sbjct: 81 QLLERWAELIMENKDDLVKMLTLENGKPLSQAEMEVTTCSGYLKWYAAEAVRTFGDVAPS 140
Query: 465 IAKDMD-THSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLMM 641
+ + S K P+GV + +NFP + AL G T I P+ + P L +
Sbjct: 141 SLQSQNFLISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGL 200
Query: 642 MELLQEAGAPPGVVNII 692
+ L QEAG P GV+N+I
Sbjct: 201 VRLAQEAGFPDGVLNVI 217
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 106 bits (254), Expect = 3e-24
Identities = 58/200 (29%), Positives = 106/200 (53%), Gaps = 3/200 (1%)
Frame = +3
Query: 102 LYIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT---WSKSTV 272
L+I+ Q+VDS +++ +P+T ++I V +A ++++ A+ A+ A++T W K +
Sbjct: 25 LFINNQHVDSVHGGRVKVYSPSTEKLICEVADADEEDVDIAVKVARAAFQTDAPWRKFSS 84
Query: 273 LTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGD 452
R + + + A + +N LA+ T + GK+I A GDV + G
Sbjct: 85 AQRGRCLSRLADCIEQNLEYLASIETLDNGKSITLARGDVQAAADCFRYYGGWADKDYGQ 144
Query: 453 SIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGAT 632
+I+ K ++ P+GV G + +NFP ++ W PA+ GNT I+K +E P +
Sbjct: 145 TIETDIKRF-AYTRHEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSA 203
Query: 633 LMMMELLQEAGAPPGVVNII 692
L + + + E G PPGV+N++
Sbjct: 204 LCLTKFVPECGFPPGVINVL 223
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 103 bits (246), Expect = 3e-23
Identities = 55/196 (28%), Positives = 99/196 (50%)
Frame = +3
Query: 105 YIDGQYVDSKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQ 284
YI G++V + + ++ NP NE + V + + +E A+ A A+ ++ S + R
Sbjct: 27 YIGGKWVTAASGKTFDVENPGLNETLAPVTDMSVEETRKAIKVAHEAFLSYRNSDIKERY 86
Query: 285 QLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITSLQLGDSIQN 464
++ ++ L+ EN LA +T E GK + DA+G+V+ + ++ GDS +
Sbjct: 87 AILRRWYDLIMENADDLATMMTLENGKALGDAKGEVVYAAKFIDWFAGEALRISGDSSMS 146
Query: 465 IAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGATLMMM 644
+ K P+GVVG + +NFP + AL G T +I+P+ + P L +
Sbjct: 147 SNPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALA 206
Query: 645 ELLQEAGAPPGVVNII 692
+L + AG P GV+N++
Sbjct: 207 KLAERAGVPAGVLNMV 222
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 99.5 bits (237), Expect = 4e-22
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 6/208 (2%)
Frame = +3
Query: 87 APTTKLYIDGQYVD--SKTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT-- 254
AP L+IDG++V I L NPAT E+IG A+ ++ SA++ A +++
Sbjct: 18 APENSLFIDGKFVSPIEPAAKPIPLINPATEEIIGTCANASAKDVDSAVENAYNTFRSGI 77
Query: 255 WSKSTVLTRQQLMFKFARLLRENQSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSIT 434
W+K R ++ K A+++RE + LA T GK A D+ E+ +
Sbjct: 78 WAKWPGKQRGLVLRKIAKMMREKRELLAGIDTINCGKPTPYALFDIDSCADMFEYYAEVA 137
Query: 435 SLQLGDSIQNIAKDMDTHSY--KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKP 608
+ + ++ + P GV+G + +NFP+ + LW PA+ +GN ++KP
Sbjct: 138 ETDNPTVKVPLPNNPGFCAFEKRFPRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKP 197
Query: 609 SEQDPGATLMMMELLQEAGAPPGVVNII 692
SE P + L + +EAG P GV+N+I
Sbjct: 198 SELAPWSCLEFALICKEAGLPDGVLNVI 225
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 57.6 bits (133), Expect = 2e-09
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 6/206 (2%)
Frame = +3
Query: 93 TTKLYIDGQYVDSKTTNWIELTNPATNE-VIGRVPEATQDELTSALDAAKRAYKTWSKST 269
T + IDG+ V++ T E P ++ V+ R A + A++AA R K W
Sbjct: 44 TIPVIIDGKEVETNTIG--EQRCPFEHKKVVARYHRAGAKHVEDAIEAALRGKKVWESLP 101
Query: 270 VLTRQQLMFKFARLLREN-QSKLAAKITEEQGKTIADAEGDVLRGIQSVEHCCSITS--- 437
R + K A L+ + KL A QGK I AE D G++ ++ T
Sbjct: 102 FADRSAIFLKAAHLISTKYRYKLMAATMIGQGKNIWQAEIDA--GMEIIDFLRFNTKYAS 159
Query: 438 -LQLGDSIQNIAKDMDTHSYKVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSE 614
L +N + Y+ G V + FNF + P L+ GN ++KPS+
Sbjct: 160 ELYASQPPENTPGVWNRMEYRPLEGFVYAITPFNFTAIAGNLAAAPLLM-GNVVLMKPSD 218
Query: 615 QDPGATLMMMELLQEAGAPPGVVNII 692
++ ++ ++ +EAG P G + I
Sbjct: 219 HAVLSSYIVYQIFREAGLPAGALQFI 244
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 57.2 bits (132), Expect = 2e-09
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 8/185 (4%)
Frame = +3
Query: 162 PATNEVIGRVPEATQDELTSALDAAKRAYKTWSKSTVLTRQQLMFKFARLLRENQSKLAA 341
P ++G V + ++ ++ A+ A K W ++ R+ + + NQ K A
Sbjct: 10 PGDGSLLGEVKLFNKSDIDQSIILAEEAQKEWKSTSFAERRNFLKALKENIIRNQDKYAE 69
Query: 342 KITEEQGKTIADAE-GDVLRGIQSVEHCCS--ITSLQLGDSIQNIAKDMDTHSYKV-PLG 509
++ GKT+ DA G++L ++ + + SL+ ++ K PLG
Sbjct: 70 IACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPTKRPNSLLTSYKGGYVKYEPLG 129
Query: 510 VVGGVAAFNFPVMIPLWMFPPALVTGNTCIIKPSEQDPGAT----LMMMELLQEAGAPPG 677
V+ + ++N+P+ L AL GN ++K SE +T M+ LLQ G P
Sbjct: 130 VIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELTAWSTHQYCEMVRSLLQSMGHSPE 189
Query: 678 VVNII 692
+V I
Sbjct: 190 LVQCI 194
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 31.9 bits (69), Expect = 0.090
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 156 TNPATNEVIG---RVPEATQDELTSALDAAKRAYKTWSKSTVLTR 281
T+ TNE++ ++ E +D L +L A+K YK WS+ L R
Sbjct: 5 TDMETNEILDQLDKIDERNEDILLKSLKASKCTYKPWSREEFLRR 49
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 29.5 bits (63), Expect = 0.48
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 120 YVDSKTTNWIELTNPATNEVIGRV-PEATQDELTSALDAAKRAY 248
Y ++T W+EL NPA EV G + E + E T+++ A RA+
Sbjct: 498 YEPARTGEWMELLNPA--EVFGNIMVEYSYPECTTSVILALRAF 539
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 495 KVPLGVVGGVAAFNFPVMIPLWMFPPALVTGNTCI 599
K +GVVGG +P P+ P ++TGN +
Sbjct: 291 KGQVGVVGGYPVMGYPPPSPVLQKPDLIMTGNRTV 325
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 132 KTTNWIELTNPATNEVIGRVPEATQDELTSALDAAKRAYKT 254
KT NW ++TNP V + + EL ++ Y+T
Sbjct: 252 KTLNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRKRYET 292
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 659 FLKELHHHERGSRILLRRLDYTRVSGYQRWREHPQWDHHREIE 531
F+ +L HH S + R+ +T + ++ WR Q +EIE
Sbjct: 369 FVNDLSHHPIFSNDEVVRVFFTEPNVFKNWRRENQKRIDQEIE 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,728
Number of Sequences: 5004
Number of extensions: 58672
Number of successful extensions: 166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -