Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c23
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    72   6e-14
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    56   6e-09
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    32   0.078
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   2.2  
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S...    26   3.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   6.8  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    25   6.8  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    25   6.8  

>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 41/107 (38%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
 Frame = +2

Query: 326 WCYIRASIDYEVSKVEIK----FYEM--FPFRVTSRLWGKMAACEIPVSLRSFVYGTYIR 487
           W   R    Y+   V+++    FY +   P R  SR WG +   EIP+ +R   +G Y +
Sbjct: 52  WAQDRHEKTYQKKGVQVEGPWQFYVLTTLPLRTLSRWWGYVNRIEIPLWMRVPAFGLYSK 111

Query: 488 MFSVNLNDAAVTDLKYYKSLSAFFTRPLRDGARYISA-APCVSPCDG 625
           +F  NL +A   D++ YK+L+ FFTR L+ GAR I   AP V P DG
Sbjct: 112 IFGCNLTEADPDDVRQYKNLAEFFTRKLKPGARVIDPDAPIVIPADG 158


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 55.6 bits (128), Expect = 6e-09
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 371 EIKFYEMFPFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLS 550
           ++      P R  SR+WG+     +P  LR+  +  Y  +F  NL++    DL +Y++  
Sbjct: 75  QVYLLSSLPLRSLSRVWGQFNRAHLPTFLRTPGFKLYAWVFGCNLSELKDPDLTHYRNFQ 134

Query: 551 AFFTRPLRDGARYIS-AAPCVSPCDG 625
            FF R LR   R +   +P VSP DG
Sbjct: 135 DFFCRELRPETRPVDPVSPVVSPVDG 160


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 31.9 bits (69), Expect = 0.078
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 404 VTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDA 514
           V+ RL G M+    P++L +F YG Y+R  S    DA
Sbjct: 300 VSMRLTGYMSLIVPPIALGAFFYGEYVRKLSRTTQDA 336


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 140 RSFLPVMNQMYKPRLRPHRPFRQ 208
           R  + + N +Y P LRP RP+ Q
Sbjct: 525 RPIICICNDLYTPALRPLRPYAQ 547


>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
           Klp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 158 MNQMYKPRLRPHRPFRQTSTIQTKSFNTNANNKT 259
           +N + +PR R H P+R +   +   F+   N +T
Sbjct: 327 INSLCEPRRRQHVPYRDSKLTRLLKFSLGGNCRT 360


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 394 EHFVKFNLDF*NFIIYASANVTPTYVH 314
           E ++ FN+DF  F+I  +A++  + V+
Sbjct: 792 EQYISFNMDFAEFLIDTNASIKGSVVN 818


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 IFTRWMPLGSVMYVGWCYIRASIDYEVSK 367
           +F  W+P  S +Y  +C I+ +I  +V K
Sbjct: 160 LFLSWLPKLSAVYGRYCVIQENIGKKVEK 188


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 511 II*VHAEHSYVRAVDEAAEGHRDFAGRHFPPQSTGHPEGEHFVKFNLDF*NFIIYASAN- 335
           ++ V   + +   + E+ + HR+   +H   ++T HP   H +  + +     ++ S+N 
Sbjct: 138 VVGVAKNYLHCVGLTESLDAHRETLKKHVLKKTTDHPILIHSIDQSSEILGAAVWTSSNS 197

Query: 334 VTPTYV 317
             P YV
Sbjct: 198 KRPVYV 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,730
Number of Sequences: 5004
Number of extensions: 52750
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)