Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c23
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11...    38   0.009
02_02_0577 - 11736474-11736609,11736756-11737003,11738002-117380...    29   2.3  
02_05_0600 - 30273080-30274692,30274709-30274949                       29   4.0  
02_05_0255 - 27184306-27184914,27185009-27185272                       29   4.0  
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420...    27   9.2  

>03_01_0014 +
           113638-113754,113836-113950,114570-114835,115365-115575,
           115915-115979,118723-118930,119457-119566,119663-119913,
           120250-120356,120442-120509,120624-120701,121070-121198,
           121341-121481,122297-122344,122648-122743,124071-124183,
           124441-124591,124745-124818,124913-125072,125356-125454,
           125532-125618,125761-125907
          Length = 946

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
 Frame = +2

Query: 500 NLNDAAVTDLKYYKSLSAFFTRPLRDGARYISAAP-C-VSPCDG 625
           +L +AA+  L+ Y SL AFF R L++G+R I A P C VSP DG
Sbjct: 328 DLQEAAMP-LEEYPSLQAFFIRSLKEGSRPIDADPNCLVSPVDG 370


>02_02_0577 -
           11736474-11736609,11736756-11737003,11738002-11738087,
           11738557-11738633,11738813-11738846,11739922-11740037,
           11740121-11740659
          Length = 411

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 103 AALWSHVSADALKEFPPSHESNVQTAVTSTQALQT 207
           AALW    A  L EF PS ESN + A       QT
Sbjct: 348 AALWYRAGARCLTEFVPSGESNERNARIFRNMTQT 382


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  INKPRTL*RPCGAMFPPTRLRSFLPVMNQMYKPRLRPHRP 199
           +++P  L R C  +FPP RL +F+P +  +Y    RP RP
Sbjct: 330 LHRPACL-RRCRLVFPPARL-AFMPPLLGVYVFTDRPPRP 367


>02_05_0255 - 27184306-27184914,27185009-27185272
          Length = 290

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 472 VDEAAEGHRDFAGRHF-PPQSTGHP 401
           + E   GH+D AG H  PP +TG P
Sbjct: 116 IKEKLPGHKDHAGEHAPPPAATGFP 140


>04_03_0379 +
           15141127-15141231,15141566-15141769,15141856-15142037,
           15142898-15143036,15143111-15143299,15143943-15144050,
           15144143-15144222,15144549-15144600,15144731-15144799,
           15144876-15144910,15145351-15145510,15147414-15147470,
           15147566-15147622,15147971-15148027,15148126-15148182,
           15148551-15148670,15148760-15148996,15149550-15149591
          Length = 649

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +1

Query: 25  VRTKTARETSNKLNKHARY**TSDVIAALWSHVSADALKEFPPSHESNVQTAVTSTQALQ 204
           ++ + ARE    LNKHAR      V  +  +H   D + +   + ES V   +  T+ +Q
Sbjct: 461 IQPRIARELQLSLNKHARKVQPRIVEESQLNHNRHDGMVQPGVARESQVNQNMHVTKGVQ 520

Query: 205 TN--EHNSNK 228
            +   +N+NK
Sbjct: 521 KHIARYNNNK 530


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,742
Number of Sequences: 37544
Number of extensions: 367250
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)