Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c23
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical pr...    84   9e-17
U00031-3|AAK18866.2|  348|Caenorhabditis elegans Hypothetical pr...    81   5e-16
U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protei...    30   1.2  
AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a prote...    30   1.2  
AL110479-18|CAB54365.1|  484|Caenorhabditis elegans Hypothetical...    29   3.6  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    28   6.3  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    28   6.3  
Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U00031-2|AAT92090.1|  377|Caenorhabditis elegans Hypothetical
           protein B0361.5b protein.
          Length = 377

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 7/141 (4%)
 Frame = +2

Query: 224 TKSFNTNANNKTK--WLNFRAIFTRWMPLGSVMYVGWCYI---RASID--YEVSKVEIKF 382
           TK     A+ K K  W+ + ++ T  + +G   YVG+ +    R  +D  +  S  +I+ 
Sbjct: 44  TKEVIIGASQKKKRSWVKWLSVST--LIIGGASYVGYLFTPDWREIVDSKHYYSNWKIRV 101

Query: 383 YEMFPFRVTSRLWGKMAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFT 562
           Y   PF   SR+ G +A  EIPV LR  + G + RM+   ++D    D K Y S +AFF 
Sbjct: 102 YLSLPFNTASRVIGGLANQEIPVWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFN 161

Query: 563 RPLRDGARYISAAPCVSPCDG 625
           R L++  R ISA+P VSP DG
Sbjct: 162 RKLKESTRPISASPLVSPADG 182


>U00031-3|AAK18866.2|  348|Caenorhabditis elegans Hypothetical
           protein B0361.5a protein.
          Length = 348

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 5/126 (3%)
 Frame = +2

Query: 263 WLNFRAIFTRWMPLGSVMYVGWCYI---RASID--YEVSKVEIKFYEMFPFRVTSRLWGK 427
           W+ + ++ T  + +G   YVG+ +    R  +D  +  S  +I+ Y   PF   SR+ G 
Sbjct: 30  WVKWLSVST--LIIGGASYVGYLFTPDWREIVDSKHYYSNWKIRVYLSLPFNTASRVIGG 87

Query: 428 MAACEIPVSLRSFVYGTYIRMFSVNLNDAAVTDLKYYKSLSAFFTRPLRDGARYISAAPC 607
           +A  EIPV LR  + G + RM+   ++D    D K Y S +AFF R L++  R ISA+P 
Sbjct: 88  LANQEIPVWLREHLLGGFARMYDCRMDDCVDPDFKNYPSFAAFFNRKLKESTRPISASPL 147

Query: 608 VSPCDG 625
           VSP DG
Sbjct: 148 VSPADG 153


>U80451-8|AAB37842.2|  288|Caenorhabditis elegans Collagen protein
           20 protein.
          Length = 288

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 385 RNVPLPGD-QSIVGENGGLRNPGVPPQLR 468
           R  P PG  Q   GE+GG  NPG P Q+R
Sbjct: 179 RGPPGPGGPQGEAGEDGGAGNPGTPGQVR 207


>AF039046-1|AAB94210.1|  458|Caenorhabditis elegans F-box a protein
           protein 195 protein.
          Length = 458

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = +2

Query: 203 RQTSTIQTKSFNTNANNKTKWLNFRAIFTRWMPLGSVMYVGWCYIRASIDYEVS---KVE 373
           RQT  I   S + N  N     NF+ IF   +   +     +C  R ++ +      +V 
Sbjct: 67  RQTCRICCLSRSANLPNLPSTANFKKIFPSLLSTANFRICRFCRARQTLRFAARLRFRVS 126

Query: 374 IKFYEMFPFRVTSRLWGKMAACEIPVSLRSFVYG 475
             FY++  F   S+ +     C++P+ L   V+G
Sbjct: 127 ANFYQVSKFDPKSKQF-----CDLPLGLVERVFG 155


>AL110479-18|CAB54365.1|  484|Caenorhabditis elegans Hypothetical
           protein Y105C5B.19 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 122 FPPTRLRSFLPVMNQMYKPRLRPHRPFRQTSTIQTKSFNTNANNKTKWLNFRAI 283
           F P R R F PVM Q   P       F+ +  I    +N N  +K K +N  A+
Sbjct: 36  FEPKRPREFSPVMAQSLPP---GEIDFQPSKIIFNAPYNENQESKIKLINTSAL 86


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 7   YYKVSLVRTKTARETSNKLNKHA 75
           YY+ + VRT T RE  +K NK A
Sbjct: 816 YYRTADVRTATERELKDKANKRA 838


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 7   YYKVSLVRTKTARETSNKLNKHA 75
           YY+ + VRT T RE  +K NK A
Sbjct: 816 YYRTADVRTATERELKDKANKRA 838


>Z46791-3|CAA86757.1|  323|Caenorhabditis elegans Hypothetical
           protein C09G5.4 protein.
          Length = 323

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 400 PGDQSIVGENGGLRNPGVP 456
           PGD+ + G+ GG  NPG P
Sbjct: 101 PGDRGLDGQPGGAGNPGQP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,304
Number of Sequences: 27780
Number of extensions: 309943
Number of successful extensions: 891
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)