Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt26c21
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   0.95 
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   2.9  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   3.8  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   3.8  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    23   6.7  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    23   6.7  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    23   8.8  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 241 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 137
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 287 FFLHSTHLLNTN*IIFYYFNYP 222
           F L S+H  NT+ ++FY  +YP
Sbjct: 100 FQLLSSHEYNTDDVVFYDVDYP 121


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 64  SSSYNEKTRKNFVPHYSKFSY 2
           SSSY E+TRK F  H++ F +
Sbjct: 78  SSSY-EQTRKPFFHHFNPFEF 97


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   REFRIMWYEILPSFFIITAAVGLPGWGLY 91
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 97  YMIKTPAR*TNSSSYNEKTRKNFVPHYSK 11
           Y IK P   TN S    K +  F+P Y+K
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAK 433


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 83  GLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGN 190
           G+++ HN T+G  + +  ++R  R+    D  + G+
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD 368


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 34  SSEFFHYNCCCW 69
           S+E  HY C CW
Sbjct: 357 SNEMAHYACDCW 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,147,204
Number of Sequences: 5004
Number of extensions: 20307
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)